FFCP PHASE1:Hg19::chr4:75975089..75975093,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:75975089..75975093,+ | |||
|description=CAGE_peak_at_chr4:75975089..75975093,+ | |description=CAGE_peak_at_chr4:75975089..75975093,+ | ||
|id=chr4:75975089..75975093,+ | |id=chr4:75975089..75975093,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000840;3.89e-10;5!CL:0002615;9.08e-10;3!CL:0002581;1.04e-07;1!CL:0000990;6.54e-07;8 | |ontology_enrichment_celltype_v019=CL:0000840;3.89e-10;5!CL:0002615;9.08e-10;3!CL:0002581;1.04e-07;1!CL:0000990;6.54e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000840,4.86e-10,5;CL:0001029,4.86e-10,5;CL:0002615,9.30e-10,3;CL:0002581,8.51e-08,1;CL:0000990,7.57e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0001045;1.04e-07;1 | |ontology_enrichment_development_v019=UBERON:0001045;1.04e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060060;1.04e-07;1!DOID:0060061;1.04e-07;1!DOID:8691;1.04e-07;1 | |ontology_enrichment_disease_v019=DOID:0060060;1.04e-07;1!DOID:0060061;1.04e-07;1!DOID:8691;1.04e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:0060060,6.52e-08,1;DOID:0060061,6.52e-08,1;DOID:8691,6.52e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.85e-36!115;UBERON:0002020!2.79e-13!34;UBERON:0003528!2.79e-13!34;UBERON:0002780!2.10e-12!41;UBERON:0001890!2.10e-12!41;UBERON:0006240!2.10e-12!41;UBERON:0003080!6.31e-12!42;UBERON:0002346!1.66e-11!90;UBERON:0002791!2.24e-11!33;UBERON:0001893!7.38e-11!34;UBERON:0001869!7.53e-11!32;UBERON:0003056!1.87e-10!61;UBERON:0005743!3.15e-10!86;UBERON:0002619!4.26e-10!22;UBERON:0003075!7.68e-10!86;UBERON:0007284!7.68e-10!86;UBERON:0000073!2.14e-09!94;UBERON:0001016!2.14e-09!94;UBERON:0001049!4.04e-09!57;UBERON:0005068!4.04e-09!57;UBERON:0006241!4.04e-09!57;UBERON:0007135!4.04e-09!57;UBERON:0002616!1.51e-08!59;UBERON:0001950!2.12e-08!20;UBERON:0000956!2.20e-08!25;UBERON:0000203!2.20e-08!25;UBERON:0001017!2.95e-08!82;UBERON:0000955!7.14e-08!69;UBERON:0006238!7.14e-08!69;UBERON:0002308!8.23e-07!9;UBERON:0000125!8.23e-07!9;UBERON:0004907!9.14e-07!5;UBERON:0000153!9.80e-07!129;UBERON:0007811!9.80e-07!129 | |ontology_enrichment_uberon=UBERON:0007023!8.85e-36!115;UBERON:0002020!2.79e-13!34;UBERON:0003528!2.79e-13!34;UBERON:0002780!2.10e-12!41;UBERON:0001890!2.10e-12!41;UBERON:0006240!2.10e-12!41;UBERON:0003080!6.31e-12!42;UBERON:0002346!1.66e-11!90;UBERON:0002791!2.24e-11!33;UBERON:0001893!7.38e-11!34;UBERON:0001869!7.53e-11!32;UBERON:0003056!1.87e-10!61;UBERON:0005743!3.15e-10!86;UBERON:0002619!4.26e-10!22;UBERON:0003075!7.68e-10!86;UBERON:0007284!7.68e-10!86;UBERON:0000073!2.14e-09!94;UBERON:0001016!2.14e-09!94;UBERON:0001049!4.04e-09!57;UBERON:0005068!4.04e-09!57;UBERON:0006241!4.04e-09!57;UBERON:0007135!4.04e-09!57;UBERON:0002616!1.51e-08!59;UBERON:0001950!2.12e-08!20;UBERON:0000956!2.20e-08!25;UBERON:0000203!2.20e-08!25;UBERON:0001017!2.95e-08!82;UBERON:0000955!7.14e-08!69;UBERON:0006238!7.14e-08!69;UBERON:0002308!8.23e-07!9;UBERON:0000125!8.23e-07!9;UBERON:0004907!9.14e-07!5;UBERON:0000153!9.80e-07!129;UBERON:0007811!9.80e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002050;1.39e-12;5!UBERON:0005423;1.39e-12;5!UBERON:0004907;2.81e-12;5!UBERON:0000059;8.65e-10;11!UBERON:0002346;9.72e-08;4!UBERON:0000923;9.72e-08;4!UBERON:0010316;9.72e-08;4!UBERON:0005291;9.72e-08;4!UBERON:0005795;1.04e-07;1!UBERON:0001154;1.04e-07;1!UBERON:0001000;1.04e-07;1!UBERON:0001153;1.04e-07;1!UBERON:0009854;1.04e-07;1!UBERON:0005352;1.04e-07;1!UBERON:0001052;1.75e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0002050;1.39e-12;5!UBERON:0005423;1.39e-12;5!UBERON:0004907;2.81e-12;5!UBERON:0000059;8.65e-10;11!UBERON:0002346;9.72e-08;4!UBERON:0000923;9.72e-08;4!UBERON:0010316;9.72e-08;4!UBERON:0005291;9.72e-08;4!UBERON:0005795;1.04e-07;1!UBERON:0001154;1.04e-07;1!UBERON:0001000;1.04e-07;1!UBERON:0001153;1.04e-07;1!UBERON:0009854;1.04e-07;1!UBERON:0005352;1.04e-07;1!UBERON:0001052;1.75e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004907,3.04e-12,5;UBERON:0000059,9.19e-10,11;UBERON:0001000,7.45e-08,1;UBERON:0005352,7.45e-08,1;UBERON:0001154,1.54e-07,1;UBERON:0001153,1.54e-07,1;UBERON:0001045,1.54e-07,1;UBERON:0001052,1.54e-07,4 | |||
|phase1_expression=0.181678379270557,0.642301571672949,0.986680828671798,3.00219895059391,1.34088328328186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0.889509253863555,0.426730222566507,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0.221729397462564,0.087834785693126,0.130979075497713,0,0,1.29818957461873,1.0447784237956,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428933980974443,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0.61642896765115,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0.128139149255701,0,0.482561763430822,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.206082023295445,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,1.58510321173008,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0.16480387422676,0,1.79323189425963,1.10513566212459,0.251932747854276,0,0.123084805461069,0,0,0.179021174675609,0,0.394573622547734,0,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0.254253650292766,0.236387681767936,0,0,1.38899995946634,0,0.241192877250816,0,0,0,1.31631238292384,0,0,0.230850775511391,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0.216388639742091,0,0.442287822516696,6.72133159426988,0,0.123563938946503,0,0,0,0,0.182454789215666,0,0,1.57833761139756,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0.443175571691151,0,0,0.213452994739353,0,0.144090417154106,0.114536596165916,1.20116498503375,0,0,0,0,0,0,0,0.600420288709789,0.547621515567972,0,0,0,0.279282401272254,0.229160424011684,0,0,0,2.23171457441873,0.403100834920358,0,0,0,0,0,0,0,2.38568906942791,0.272406812223151,0.160753148465019,0,0,0.899895566206002,1.5476039091159,0.121499113316049,0,0.788057072991982,0.0524545881349981,0,0,0,0.714695326373367,0.662091970365432,0,0,0.864221491201268,0.326587360109409,0,0,0,0,0,0,0.258565912723101,0.26446520348538,0.171086837884329,0,0.427149650270779,0.471612915298998,0.414239055347196,0.496166021811951,0.395223263795889,0.243585196761792,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0,0.18628920882415,0,0.124980407962107,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0,0,0.163565394255844,0.327609848846413,0,0,1.59989916683944,0,0,0,0,0,0,0.127894371303652,0,0.157265941855896,0,4.24331324885063,0.637724760305049,2.60265104943905,0,0,0,0,0,0,0.513833800771676,0,0.798169295285756,3.89721092057435,0,0.276629009856872,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0,0,0.206686796501184,0.0634158101939068,0.546974809018219,0.548257766857182,0.992422356778588,0,0.127762427639595,1.07140367175657,0.672567444437648,0,0.227662191351298,0.354809480650555,0.460935950223117,0,0,0.460409414939944,0,0,1.17739639275771,0.157115589916002,1.40136081656895,2.73947616152849,0,0,0.857718530119876,0,0,0,0,0,0,0,1.72090943528111,0,0,0.846774100381858,0,0,0,0,0,0.243835849964539,0,0.513314034281235,6.95888658802919,0,0.233939463462106,0,0,0.33883824611688,0,0.150962843566674,0.231522474323834,0.437119121007915,0.940634592723046,0.490296643507811,0.942706188406504,0,0,0,0,0.187967835959707,0,0,0,0,0,0.730336388246517,0.458729283404541,0.143339583151451,0,0.271965960763659,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0.454672189309436,0.267964130156178,0,0.517164979309476,0.426467963801962,1.1903221573187,0,0.0620747142958579,0.224263725161227,2.3549448562921,0.808468755832877,0.435433495793923,1.02669990325584,0.0673520530145875,0.430333232356058,0,0.244209805832924,0,0,0,0,0,1.62758471326295,0,0.201273793591026,0.320568492303233 | |phase1_expression=0.181678379270557,0.642301571672949,0.986680828671798,3.00219895059391,1.34088328328186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0.889509253863555,0.426730222566507,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0.221729397462564,0.087834785693126,0.130979075497713,0,0,1.29818957461873,1.0447784237956,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428933980974443,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0.61642896765115,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0.128139149255701,0,0.482561763430822,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.206082023295445,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,1.58510321173008,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0.16480387422676,0,1.79323189425963,1.10513566212459,0.251932747854276,0,0.123084805461069,0,0,0.179021174675609,0,0.394573622547734,0,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0.254253650292766,0.236387681767936,0,0,1.38899995946634,0,0.241192877250816,0,0,0,1.31631238292384,0,0,0.230850775511391,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0.216388639742091,0,0.442287822516696,6.72133159426988,0,0.123563938946503,0,0,0,0,0.182454789215666,0,0,1.57833761139756,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0.443175571691151,0,0,0.213452994739353,0,0.144090417154106,0.114536596165916,1.20116498503375,0,0,0,0,0,0,0,0.600420288709789,0.547621515567972,0,0,0,0.279282401272254,0.229160424011684,0,0,0,2.23171457441873,0.403100834920358,0,0,0,0,0,0,0,2.38568906942791,0.272406812223151,0.160753148465019,0,0,0.899895566206002,1.5476039091159,0.121499113316049,0,0.788057072991982,0.0524545881349981,0,0,0,0.714695326373367,0.662091970365432,0,0,0.864221491201268,0.326587360109409,0,0,0,0,0,0,0.258565912723101,0.26446520348538,0.171086837884329,0,0.427149650270779,0.471612915298998,0.414239055347196,0.496166021811951,0.395223263795889,0.243585196761792,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0,0.18628920882415,0,0.124980407962107,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0,0,0.163565394255844,0.327609848846413,0,0,1.59989916683944,0,0,0,0,0,0,0.127894371303652,0,0.157265941855896,0,4.24331324885063,0.637724760305049,2.60265104943905,0,0,0,0,0,0,0.513833800771676,0,0.798169295285756,3.89721092057435,0,0.276629009856872,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0,0,0.206686796501184,0.0634158101939068,0.546974809018219,0.548257766857182,0.992422356778588,0,0.127762427639595,1.07140367175657,0.672567444437648,0,0.227662191351298,0.354809480650555,0.460935950223117,0,0,0.460409414939944,0,0,1.17739639275771,0.157115589916002,1.40136081656895,2.73947616152849,0,0,0.857718530119876,0,0,0,0,0,0,0,1.72090943528111,0,0,0.846774100381858,0,0,0,0,0,0.243835849964539,0,0.513314034281235,6.95888658802919,0,0.233939463462106,0,0,0.33883824611688,0,0.150962843566674,0.231522474323834,0.437119121007915,0.940634592723046,0.490296643507811,0.942706188406504,0,0,0,0,0.187967835959707,0,0,0,0,0,0.730336388246517,0.458729283404541,0.143339583151451,0,0.271965960763659,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0.454672189309436,0.267964130156178,0,0.517164979309476,0.426467963801962,1.1903221573187,0,0.0620747142958579,0.224263725161227,2.3549448562921,0.808468755832877,0.435433495793923,1.02669990325584,0.0673520530145875,0.430333232356058,0,0.244209805832924,0,0,0,0,0,1.62758471326295,0,0.201273793591026,0.320568492303233 | ||
|short_description=p@chr4:75975089..75975093,+ | |short_description=p@chr4:75975089..75975093,+ | ||
}} | }} |
Latest revision as of 06:51, 30 July 2015
Short description: | p@chr4:75975089..75975093, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:75975089..75975093, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
immature conventional dendritic cell | 4.86e-10 | 5 |
common dendritic progenitor | 4.86e-10 | 5 |
adipocyte of omentum tissue | 9.30e-10 | 3 |
perirenal preadipocyte | 8.51e-08 | 1 |
conventional dendritic cell | 7.57e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
lower digestive tract | 3.04e-12 | 5 |
large intestine | 9.19e-10 | 11 |
vas deferens | 7.45e-08 | 1 |
spermatic cord | 7.45e-08 | 1 |
vermiform appendix | 1.54e-07 | 1 |
caecum | 1.54e-07 | 1 |
midgut | 1.54e-07 | 1 |
rectum | 1.54e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 6.52e-08 | 1 |
cutaneous T cell lymphoma | 6.52e-08 | 1 |
mycosis fungoides | 6.52e-08 | 1 |