FFCP PHASE1:Hg19::chr6:168250971..168250985,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:168250971..168250985,+ | |||
|coexpression_cluster_id=C2725 | |||
|description=CAGE_peak_at_chr6:168250971..168250985,+ | |description=CAGE_peak_at_chr6:168250971..168250985,+ | ||
|id=chr6:168250971..168250985,+ | |id=chr6:168250971..168250985,+ | ||
|ontology_enrichment_celltype=CL:0002586!4.77e-19!3;CL:0000077!6.21e-19!19;CL:0000149!2.03e-14!4;CL:0000076!9.97e-08!62;CL:0000313!2.10e-07!1 | |ontology_enrichment_celltype=CL:0002586!4.77e-19!3;CL:0000077!6.21e-19!19;CL:0000149!2.03e-14!4;CL:0000076!9.97e-08!62;CL:0000313!2.10e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002586;2.75e-74;3!CL:0000149;5.53e-56;4!CL:0000313;7.62e-26;1!CL:0000147;1.26e-16;14!CL:0002097;7.30e-14;2!CL:0000159;1.21e-13;2!CL:0000174;1.10e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,2.14e-74,3;CL:0000149,4.58e-56,4;CL:0000313,9.79e-26,1;CL:0000147,1.20e-16,14;CL:0002097,7.30e-14,2;CL:0000159,1.37e-13,2;CL:0000174,1.10e-09,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2152!2.10e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:2152;7.62e-26;1!DOID:4468;6.43e-14;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,9.79e-26,1;DOID:4468,6.43e-14,2 | |||
|ontology_enrichment_uberon=UBERON:0001781!4.77e-19!3;UBERON:0001782!4.77e-19!3;UBERON:0005424!4.77e-19!3;UBERON:0000966!1.24e-11!5;UBERON:0005388!1.24e-11!5;UBERON:0001802!1.24e-11!5;UBERON:0004911!2.10e-07!1;UBERON:0000997!5.45e-07!1;UBERON:0005056!5.45e-07!1;UBERON:0001301!5.78e-07!1;UBERON:0003112!6.12e-07!1;UBERON:0000032!6.12e-07!1;UBERON:0005253!6.12e-07!1;UBERON:0003128!6.12e-07!1;UBERON:0002241!6.12e-07!1;UBERON:0001703!6.12e-07!1;UBERON:0004761!6.12e-07!1;UBERON:0009617!6.12e-07!1 | |ontology_enrichment_uberon=UBERON:0001781!4.77e-19!3;UBERON:0001782!4.77e-19!3;UBERON:0005424!4.77e-19!3;UBERON:0000966!1.24e-11!5;UBERON:0005388!1.24e-11!5;UBERON:0001802!1.24e-11!5;UBERON:0004911!2.10e-07!1;UBERON:0000997!5.45e-07!1;UBERON:0005056!5.45e-07!1;UBERON:0001301!5.78e-07!1;UBERON:0003112!6.12e-07!1;UBERON:0000032!6.12e-07!1;UBERON:0005253!6.12e-07!1;UBERON:0003128!6.12e-07!1;UBERON:0002241!6.12e-07!1;UBERON:0001703!6.12e-07!1;UBERON:0004761!6.12e-07!1;UBERON:0009617!6.12e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0001781;2.75e-74;3!UBERON:0001782;2.75e-74;3!UBERON:0000966;5.45e-45;5!UBERON:0005388;5.45e-45;5!UBERON:0001802;5.45e-45;5!UBERON:0004911;7.62e-26;1!UBERON:0007625;6.11e-21;11!UBERON:0004909;1.21e-13;2!UBERON:0000019;1.91e-12;19!UBERON:0000047;1.91e-12;19!UBERON:0004088;1.91e-12;19!UBERON:0010230;1.91e-12;19!UBERON:0000970;7.40e-12;20!UBERON:0002104;2.52e-11;21!UBERON:0001456;2.52e-11;21!UBERON:0000020;2.12e-10;23!UBERON:0001032;5.40e-10;24!UBERON:0004456;5.40e-10;24!UBERON:0002369;1.10e-09;3!UBERON:0001235;1.10e-09;3!UBERON:0006858;1.10e-09;3!UBERON:0010371;2.46e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,2.14e-74,3;UBERON:0005424,2.14e-74,3;UBERON:0001781,4.58e-56,4;UBERON:0000966,1.04e-37,6;UBERON:0005388,1.04e-37,6;UBERON:0001802,1.04e-37,6;UBERON:0004911,9.79e-26,1;UBERON:0007625,5.70e-21,11;UBERON:0004909,1.37e-13,2;UBERON:0000019,7.13e-12,20;UBERON:0000047,7.13e-12,20;UBERON:0010312,7.13e-12,20;UBERON:0004088,7.13e-12,20;UBERON:0010230,7.13e-12,20;UBERON:0003072,7.13e-12,20;UBERON:0004128,7.13e-12,20;UBERON:0003071,7.13e-12,20;UBERON:0000970,2.43e-11,21;UBERON:0002104,2.43e-11,21;UBERON:0001456,7.41e-11,22;UBERON:0000020,5.23e-10,24;UBERON:0001032,5.23e-10,24;UBERON:0004456,5.23e-10,24;UBERON:0002369,1.10e-09,3;UBERON:0001235,1.10e-09,3;UBERON:0006858,1.10e-09,3;UBERON:0005085,6.85e-08,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.499864955910285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.64190275256056,3.28014645699706,2.60302715731442,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,1.02268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.2012543098459,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.272406812223151,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854299300541557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,12.0087291169958,2.08795433572169,0,0,0,0,0.926404341482917,0.877136198314828,0,0.964570191354574,0.337884881306145,0.512483037175893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0.231051332300676,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01339777236026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.499864955910285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.64190275256056,3.28014645699706,2.60302715731442,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,1.02268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.2012543098459,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.272406812223151,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854299300541557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,12.0087291169958,2.08795433572169,0,0,0,0,0.926404341482917,0.877136198314828,0,0.964570191354574,0.337884881306145,0.512483037175893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0.231051332300676,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01339777236026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr6:168250971..168250985,+ | |short_description=p@chr6:168250971..168250985,+ | ||
}} | }} |
Latest revision as of 22:12, 30 July 2015
Short description: | p@chr6:168250971..168250985, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:168250971..168250985, + |
Coexpression cluster: | C2725_clear_mesothelioma_Retinal_serous_gall_signet_bile |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 2.14e-74 | 3 |
visual pigment cell | 4.58e-56 | 4 |
serous secreting cell | 9.79e-26 | 1 |
pigment cell | 1.20e-16 | 14 |
cortical cell of adrenal gland | 7.30e-14 | 2 |
seromucus secreting cell | 1.37e-13 | 2 |
steroid hormone secreting cell | 1.10e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 2.14e-74 | 3 |
presumptive retinal pigmented epithelium | 2.14e-74 | 3 |
layer of retina | 4.58e-56 | 4 |
retina | 1.04e-37 | 6 |
photoreceptor array | 1.04e-37 | 6 |
posterior segment of eyeball | 1.04e-37 | 6 |
epithelium of female gonad | 9.79e-26 | 1 |
pigment epithelium of eye | 5.70e-21 | 11 |
epithelium of gonad | 1.37e-13 | 2 |
camera-type eye | 7.13e-12 | 20 |
simple eye | 7.13e-12 | 20 |
immature eye | 7.13e-12 | 20 |
ocular region | 7.13e-12 | 20 |
eyeball of camera-type eye | 7.13e-12 | 20 |
optic cup | 7.13e-12 | 20 |
optic vesicle | 7.13e-12 | 20 |
eye primordium | 7.13e-12 | 20 |
eye | 2.43e-11 | 21 |
visual system | 2.43e-11 | 21 |
face | 7.41e-11 | 22 |
sense organ | 5.23e-10 | 24 |
sensory system | 5.23e-10 | 24 |
entire sense organ system | 5.23e-10 | 24 |
adrenal gland | 1.10e-09 | 3 |
adrenal cortex | 1.10e-09 | 3 |
adrenal/interrenal gland | 1.10e-09 | 3 |
ectodermal placode | 6.85e-08 | 31 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 9.79e-26 | 1 |
clear cell adenocarcinoma | 6.43e-14 | 2 |