FFCP PHASE1:Hg19::chr7:80000596..80000626,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:80000596..80000626,+ | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_at_chr7:80000596..80000626,+ | |description=CAGE_peak_at_chr7:80000596..80000626,+ | ||
|id=chr7:80000596..80000626,+ | |id=chr7:80000596..80000626,+ | ||
|ontology_enrichment_celltype=CL:0002144!2.58e-17!3;CL:0005020!5.35e-09!6;CL:0002138!5.35e-09!6;CL:0005022!5.35e-09!6;CL:0002139!8.26e-08!24 | |ontology_enrichment_celltype=CL:0002144!2.58e-17!3;CL:0005020!5.35e-09!6;CL:0002138!5.35e-09!6;CL:0005022!5.35e-09!6;CL:0002139!8.26e-08!24 | ||
|ontology_enrichment_celltype_v019=CL:0002138;3.95e-30;6!CL:0002144;6.92e-27;3!CL:0000062;1.20e-20;9!CL:0002139;1.48e-20;24!CL:0000115;2.97e-10;36!CL:0002078;1.23e-09;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,4.15e-30,6;CL:0002138,4.15e-30,6;CL:0005022,4.15e-30,6;CL:0002144,6.92e-27,3;CL:0002139,1.51e-20,24;CL:0000062,4.85e-17,11;CL:0000375,4.85e-17,11;CL:0000335,4.85e-17,11;CL:0000115,9.06e-14,36;CL:0002078,4.80e-11,45;CL:0000213,1.37e-08,58;CL:0000215,1.37e-08,58 | |||
|ontology_enrichment_development_v019=CL:0005022;3.95e-30;6!CL:0000335;4.98e-17;11 | |||
|ontology_enrichment_disease=DOID:3371!4.09e-07!1;DOID:4549!4.09e-07!1;DOID:5861!4.09e-07!1;DOID:6496!4.09e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:3371;1.53e-21;1!DOID:4549;1.53e-21;1!DOID:5861;1.53e-21;1!DOID:6496;1.53e-21;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.53e-21,1;DOID:4549,1.53e-21,1;DOID:5861,1.53e-21,1;DOID:6496,1.53e-21,1 | |||
|ontology_enrichment_uberon=UBERON:0001915!2.58e-17!3;UBERON:0001982!2.58e-17!3;UBERON:0002465!4.43e-09!10;UBERON:0007023!7.05e-07!115;UBERON:0001473!7.59e-07!8;UBERON:0004536!7.59e-07!8;UBERON:0006558!7.59e-07!8;UBERON:0005418!8.49e-07!1;UBERON:0001389!8.49e-07!1;UBERON:0000026!8.49e-07!1;UBERON:0008784!8.49e-07!1;UBERON:0006058!8.49e-07!1;UBERON:0003663!8.49e-07!1;UBERON:0001383!8.49e-07!1;UBERON:0004256!8.49e-07!1;UBERON:0002529!8.49e-07!1;UBERON:0004708!8.49e-07!1;UBERON:0002101!8.49e-07!1;UBERON:0004709!8.49e-07!1;UBERON:0003661!8.49e-07!1;UBERON:0002471!8.49e-07!1;UBERON:0004357!8.49e-07!1;UBERON:0009872!8.49e-07!1;UBERON:0004347!8.49e-07!1;UBERON:0005420!8.49e-07!1;UBERON:0005732!8.49e-07!1;UBERON:0006057!8.49e-07!1;UBERON:0000978!8.49e-07!1;UBERON:0002103!8.49e-07!1;UBERON:0001665!8.49e-07!1;UBERON:0003823!8.49e-07!1;UBERON:0000154!8.49e-07!1;UBERON:0005733!8.49e-07!1;UBERON:0005730!8.49e-07!1 | |ontology_enrichment_uberon=UBERON:0001915!2.58e-17!3;UBERON:0001982!2.58e-17!3;UBERON:0002465!4.43e-09!10;UBERON:0007023!7.05e-07!115;UBERON:0001473!7.59e-07!8;UBERON:0004536!7.59e-07!8;UBERON:0006558!7.59e-07!8;UBERON:0005418!8.49e-07!1;UBERON:0001389!8.49e-07!1;UBERON:0000026!8.49e-07!1;UBERON:0008784!8.49e-07!1;UBERON:0006058!8.49e-07!1;UBERON:0003663!8.49e-07!1;UBERON:0001383!8.49e-07!1;UBERON:0004256!8.49e-07!1;UBERON:0002529!8.49e-07!1;UBERON:0004708!8.49e-07!1;UBERON:0002101!8.49e-07!1;UBERON:0004709!8.49e-07!1;UBERON:0003661!8.49e-07!1;UBERON:0002471!8.49e-07!1;UBERON:0004357!8.49e-07!1;UBERON:0009872!8.49e-07!1;UBERON:0004347!8.49e-07!1;UBERON:0005420!8.49e-07!1;UBERON:0005732!8.49e-07!1;UBERON:0006057!8.49e-07!1;UBERON:0000978!8.49e-07!1;UBERON:0002103!8.49e-07!1;UBERON:0001665!8.49e-07!1;UBERON:0003823!8.49e-07!1;UBERON:0000154!8.49e-07!1;UBERON:0005733!8.49e-07!1;UBERON:0005730!8.49e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0010523;6.92e-27;3!UBERON:0001915;6.92e-27;3!UBERON:0001982;6.92e-27;3!UBERON:0001473;8.35e-23;8!UBERON:0004536;8.35e-23;8!UBERON:0006558;8.35e-23;8!UBERON:0002465;2.13e-18;10!UBERON:0001474;3.34e-18;18!UBERON:0004765;9.89e-13;26!UBERON:0001434;1.94e-09;36!UBERON:0002418;4.52e-08;3!UBERON:0004755;4.52e-08;3!UBERON:0002369;5.54e-08;3!UBERON:0001235;5.54e-08;3!UBERON:0006858;5.54e-08;3!UBERON:0002405;3.26e-07;27!UBERON:0000055;5.00e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010523,6.92e-27,3;UBERON:0001915,6.92e-27,3;UBERON:0001982,6.92e-27,3;UBERON:0001473,8.67e-23,8;UBERON:0004536,8.67e-23,8;UBERON:0006558,8.67e-23,8;UBERON:0002465,2.19e-18,10;UBERON:0002418,4.52e-08,3;UBERON:0004755,4.52e-08,3;UBERON:0002369,5.54e-08,3;UBERON:0001235,5.54e-08,3;UBERON:0006858,5.54e-08,3;UBERON:0000055,2.46e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61131726843659,1.52054421143703,0.976248230192678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.47535988059329,2.77791307545966,5.13686211033415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8124609615663,11.3863109890411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.79618921797275,0,0,0,0,0,0,0.140669416410513,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.0969890164884194,42.1864285585371,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.76857044137197,0,0,0,0,0,0,0.0675375846183947,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0.198950775161368,0.237840181555137,0,0,0,0,0,0,0.245148321753905,0.235676547101626,0,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0,0,0.0636471582781649,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61131726843659,1.52054421143703,0.976248230192678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.47535988059329,2.77791307545966,5.13686211033415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8124609615663,11.3863109890411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.79618921797275,0,0,0,0,0,0,0.140669416410513,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.0969890164884194,42.1864285585371,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.76857044137197,0,0,0,0,0,0,0.0675375846183947,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0.198950775161368,0.237840181555137,0,0,0,0,0,0,0.245148321753905,0.235676547101626,0,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0,0,0.0636471582781649,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr7:80000596..80000626,+ | |short_description=p@chr7:80000596..80000626,+ | ||
}} | }} |
Latest revision as of 11:57, 31 July 2015
Short description: | p@chr7:80000596..80000626, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:80000596..80000626, + |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 4.15e-30 | 6 |
endothelial cell of lymphatic vessel | 4.15e-30 | 6 |
vascular lymphangioblast | 4.15e-30 | 6 |
capillary endothelial cell | 6.92e-27 | 3 |
endothelial cell of vascular tree | 1.51e-20 | 24 |
osteoblast | 4.85e-17 | 11 |
osteoprogenitor cell | 4.85e-17 | 11 |
mesenchyme condensation cell | 4.85e-17 | 11 |
endothelial cell | 9.06e-14 | 36 |
meso-epithelial cell | 4.80e-11 | 45 |
lining cell | 1.37e-08 | 58 |
barrier cell | 1.37e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
microcirculatory vessel | 6.92e-27 | 3 |
endothelium of capillary | 6.92e-27 | 3 |
capillary | 6.92e-27 | 3 |
lymphatic vessel | 8.67e-23 | 8 |
lymph vasculature | 8.67e-23 | 8 |
lymphatic part of lymphoid system | 8.67e-23 | 8 |
lymphoid system | 2.19e-18 | 10 |
cartilage tissue | 4.52e-08 | 3 |
skeletal tissue | 4.52e-08 | 3 |
adrenal gland | 5.54e-08 | 3 |
adrenal cortex | 5.54e-08 | 3 |
adrenal/interrenal gland | 5.54e-08 | 3 |
vessel | 2.46e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.53e-21 | 1 |
extraosseous chondrosarcoma | 1.53e-21 | 1 |
myxoid chondrosarcoma | 1.53e-21 | 1 |
extraskeletal myxoid chondrosarcoma | 1.53e-21 | 1 |