FFCP PHASE1:Hg19::chrX:118018841..118018849,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chrX:118018841..118018849,+ | |||
|description=CAGE_peak_at_chrX:118018841..118018849,+ | |||
|id=chrX:118018841..118018849,+ | |||
|ontology_enrichment_celltype=CL:0000181!1.08e-09!12;CL:0000417!1.08e-09!12;CL:0000668!1.08e-09!12;CL:0000414!1.08e-09!12;CL:0000412!1.08e-09!12;CL:0000182!1.08e-09!12;CL:0000066!2.10e-09!254;CL:0000223!3.71e-09!59;CL:1000415!9.67e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:1000415;9.72e-14;2!CL:0000182;1.65e-08;12!CL:0000319;7.50e-08;1!CL:0000222;3.10e-07;1!CL:0002379;3.10e-07;1!CL:0000244;7.94e-07;4!CL:0000731;7.94e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,1.10e-13,2;CL:0000066,2.53e-11,253;CL:0000182,1.47e-08,12;CL:0000319,7.50e-08,1;CL:0002379,2.66e-07,1;CL:0000244,7.72e-07,4;CL:0000731,7.72e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0001041;2.95e-09;30!UBERON:0009497;6.86e-08;13 | |||
|ontology_enrichment_disease=DOID:305!1.46e-17!106;DOID:0050687!1.36e-12!143;DOID:162!2.00e-09!235;DOID:14566!5.19e-09!239;DOID:7!6.34e-08!39 | |||
|ontology_enrichment_disease_v019=DOID:3030;7.50e-08;1!DOID:5662;1.10e-07;1!DOID:3620;3.10e-07;1!DOID:3565;3.10e-07;1!DOID:1749;4.08e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.31e-17,106;DOID:0050687,3.80e-13,143;DOID:162,3.95e-09,235;DOID:14566,7.64e-09,239;DOID:3030,7.50e-08,1;DOID:5662,1.10e-07,1;DOID:3620,2.66e-07,1;DOID:3565,2.66e-07,1;DOID:1749,3.70e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0005911!5.03e-17!82;UBERON:0003929!2.18e-15!54;UBERON:0004119!6.37e-15!169;UBERON:0000925!6.37e-15!169;UBERON:0006595!6.37e-15!169;UBERON:0009497!1.60e-12!25;UBERON:0000015!1.60e-12!25;UBERON:0002423!1.60e-12!25;UBERON:0006235!1.60e-12!25;UBERON:0004161!1.60e-12!25;UBERON:0001007!1.67e-10!155;UBERON:0001555!1.67e-10!155;UBERON:0007026!1.67e-10!155;UBERON:0007499!2.34e-10!25;UBERON:0009856!7.33e-10!26;UBERON:0008835!8.07e-10!22;UBERON:0003894!8.07e-10!22;UBERON:0009854!2.68e-09!23;UBERON:0002294!4.41e-09!7;UBERON:0001173!4.41e-09!7;UBERON:0004912!4.41e-09!7;UBERON:0004921!1.36e-08!129;UBERON:0004185!1.36e-08!129;UBERON:0002530!2.32e-08!59;UBERON:0000162!4.34e-08!14;UBERON:0001353!4.34e-08!14;UBERON:0000163!4.34e-08!14;UBERON:0006866!4.34e-08!14;UBERON:0000164!4.34e-08!14;UBERON:0000931!4.34e-08!14;UBERON:0000077!5.28e-08!130;UBERON:0002368!5.54e-08!35;UBERON:0002107!1.65e-07!19;UBERON:0006925!1.65e-07!19;UBERON:0008836!1.65e-07!19;UBERON:0004122!1.79e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;7.48e-15;25!UBERON:0002110;1.89e-09;3!UBERON:0002294;1.18e-08;7!UBERON:0001173;1.18e-08;7!UBERON:0002107;4.94e-08;19!UBERON:0006925;4.94e-08;19!UBERON:0002368;1.11e-07;33!UBERON:0000997;1.61e-07;1!UBERON:0005056;1.61e-07;1!UBERON:0004176;1.61e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,7.90e-16,82;UBERON:0009497,6.82e-15,25;UBERON:0000015,6.82e-15,25;UBERON:0002423,6.82e-15,25;UBERON:0006235,6.82e-15,25;UBERON:0004161,6.82e-15,25;UBERON:0003929,6.82e-12,54;UBERON:0007499,1.79e-11,25;UBERON:0009856,5.36e-11,26;UBERON:0008835,1.00e-09,22;UBERON:0003894,1.00e-09,22;UBERON:0002110,2.06e-09,3;UBERON:0006242,2.06e-09,3;UBERON:0009854,2.81e-09,23;UBERON:0004119,1.56e-08,160;UBERON:0000925,1.56e-08,160;UBERON:0006595,1.56e-08,160;UBERON:0002107,4.51e-08,19;UBERON:0006925,4.51e-08,19;UBERON:0008836,4.51e-08,19;UBERON:0002368,6.71e-08,35;UBERON:0005172,7.17e-08,54;UBERON:0005173,7.17e-08,54;UBERON:0005177,1.03e-07,101;UBERON:0000997,1.72e-07,1;UBERON:0005056,1.72e-07,1;UBERON:0001007,1.89e-07,145;UBERON:0001555,1.89e-07,145;UBERON:0007026,1.89e-07,145;UBERON:0002530,4.35e-07,59;UBERON:0002417,6.13e-07,60;UBERON:0000916,6.13e-07,60;UBERON:0002294,8.16e-07,9;UBERON:0001173,8.16e-07,9;UBERON:0004912,8.16e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.164201178899891,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,1.96565443335525,5.31710916013264,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40354529212299,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.510450849978337,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,1.72202149068492,0,1.33029046061003,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,4.6785135102055,0,0,0.222886768554957,0,0,0,0,0,0,1.8922479853894,0,0,0,0,0,0,0,0,0.179736702294654,2.86433879480975,0,0.591860433821602,0,0,0,0,0,0,0,0,0.227586896570999,7.88186315907576,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0.113942055847001,0,0.0897576444097721,0,0,0,0,0,0,0,0.451191321234361,0.392125068635479,1.34257269580674,0,0,0,0.979396848954886,0,0,0,0.265372693510018,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20258735531594,0.103688191397247,0,0,0,0,0,0,0,2.15583274311631,4.87531556850254,0.17472666824203,0,0,0,0,0.581934098930517,0,0,0,0,0,15.2530078533146,2.00397050628834,0,0,0,0,0.171594997861965,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,0,0.26961417541674,4.0355267421047,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,1.16160370171347,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,3.22414914091781,0,0,0,0,1.40963004463334,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41159491818903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,5.00811559058989,0,0,0,0,2.93684045407761,0,0,0,0,0,0,0,0,0,0,0,0,0,4.58653788384978,8.60205180638018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.733714394086716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0.127762427639595,0,0,0,0,0.177404740325278,0,4.6301762548103,0,0,0.827356886187777,9.89959476839415,0.627944742804112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48165108531456,1.91107787795487,0,0,0.365753774946808,0,0,0,0,0,0,0,0,0,0,0,0,0.470317296361523,0.245148321753905,0,0,0,0,0,0,0,0,1.42843150884526,1.41157948686277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0.560659312903067,0.12729431655633,0,0,0,0,1.36272190246085,0.332660356546013,0,0,0,0,0,0,0,0.665756774185513,0,0 | |||
|short_description=p@chrX:118018841..118018849,+ | |||
}} |
Latest revision as of 05:15, 1 August 2015
Short description: | p@chrX:118018841..118018849, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chrX:118018841..118018849, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 1.10e-13 | 2 |
epithelial cell | 2.53e-11 | 253 |
hepatocyte | 1.47e-08 | 12 |
mucus secreting cell | 7.50e-08 | 1 |
meningothelial cell | 2.66e-07 | 1 |
transitional epithelial cell | 7.72e-07 | 4 |
urothelial cell | 7.72e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 7.90e-16 | 82 |
epithelium of foregut-midgut junction | 6.82e-15 | 25 |
anatomical boundary | 6.82e-15 | 25 |
hepatobiliary system | 6.82e-15 | 25 |
foregut-midgut junction | 6.82e-15 | 25 |
septum transversum | 6.82e-15 | 25 |
gut epithelium | 6.82e-12 | 54 |
epithelial sac | 1.79e-11 | 25 |
sac | 5.36e-11 | 26 |
hepatic diverticulum | 1.00e-09 | 22 |
liver primordium | 1.00e-09 | 22 |
gallbladder | 2.06e-09 | 3 |
gall bladder primordium | 2.06e-09 | 3 |
digestive tract diverticulum | 2.81e-09 | 23 |
endoderm-derived structure | 1.56e-08 | 160 |
endoderm | 1.56e-08 | 160 |
presumptive endoderm | 1.56e-08 | 160 |
liver | 4.51e-08 | 19 |
digestive gland | 4.51e-08 | 19 |
liver bud | 4.51e-08 | 19 |
endocrine gland | 6.71e-08 | 35 |
abdomen element | 7.17e-08 | 54 |
abdominal segment element | 7.17e-08 | 54 |
trunk region element | 1.03e-07 | 101 |
mammalian vulva | 1.72e-07 | 1 |
external female genitalia | 1.72e-07 | 1 |
digestive system | 1.89e-07 | 145 |
digestive tract | 1.89e-07 | 145 |
primitive gut | 1.89e-07 | 145 |
gland | 4.35e-07 | 59 |
abdominal segment of trunk | 6.13e-07 | 60 |
abdomen | 6.13e-07 | 60 |
biliary system | 8.16e-07 | 9 |
biliary tree | 8.16e-07 | 9 |
biliary bud | 8.16e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.31e-17 | 106 |
cell type cancer | 3.80e-13 | 143 |
cancer | 3.95e-09 | 235 |
disease of cellular proliferation | 7.64e-09 | 239 |
mucinous adenocarcinoma | 7.50e-08 | 1 |
pleomorphic carcinoma | 1.10e-07 | 1 |
central nervous system cancer | 2.66e-07 | 1 |
meningioma | 2.66e-07 | 1 |
squamous cell carcinoma | 3.70e-07 | 14 |