FFCP PHASE1:Hg19::chrX:152911654..152911663,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chrX:152911654..152911663,+ | |||
|coexpression_cluster_id=C786 | |coexpression_cluster_id=C786 | ||
|description=CAGE_peak_at_chrX:152911654..152911663,+ | |description=CAGE_peak_at_chrX:152911654..152911663,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000181!2.46e-17!12;CL:0000417!2.46e-17!12;CL:0000668!2.46e-17!12;CL:0000414!2.46e-17!12;CL:0000412!2.46e-17!12;CL:0000182!2.46e-17!12;CL:0002563!8.14e-07!4 | |ontology_enrichment_celltype=CL:0000181!2.46e-17!12;CL:0000417!2.46e-17!12;CL:0000668!2.46e-17!12;CL:0000414!2.46e-17!12;CL:0000412!2.46e-17!12;CL:0000182!2.46e-17!12;CL:0002563!8.14e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.25e-37;12 | |ontology_enrichment_celltype_v019=CL:0000182;1.25e-37;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.26e-37,12;CL:0000223,1.46e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;6.65e-72;11!UBERON:0009497;4.89e-61;13!UBERON:0001041;4.23e-27;30!UBERON:0003104;5.79e-26;31 | |ontology_enrichment_development_v019=UBERON:0004161;6.65e-72;11!UBERON:0009497;4.89e-61;13!UBERON:0001041;4.23e-27;30!UBERON:0003104;5.79e-26;31 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:7;8.45e-13;39 | |ontology_enrichment_disease_v019=DOID:7;8.45e-13;39 | ||
|ontology_enrichment_disease_v019_2=DOID:7,2.67e-12,39 | |||
|ontology_enrichment_uberon=UBERON:0005057!1.91e-21!26;UBERON:0002107!3.82e-19!19;UBERON:0006925!3.82e-19!19;UBERON:0008836!3.82e-19!19;UBERON:0008835!1.33e-16!22;UBERON:0003894!1.33e-16!22;UBERON:0009854!6.71e-16!23;UBERON:0007499!1.15e-14!25;UBERON:0009497!1.15e-14!25;UBERON:0000015!1.15e-14!25;UBERON:0002423!1.15e-14!25;UBERON:0006235!1.15e-14!25;UBERON:0004161!1.15e-14!25;UBERON:0009856!4.06e-14!26;UBERON:0002365!6.57e-12!31;UBERON:0002330!6.57e-12!31;UBERON:0002368!1.36e-10!35;UBERON:0003929!1.77e-10!54;UBERON:0005172!2.96e-10!55;UBERON:0005173!2.96e-10!55;UBERON:0002417!2.92e-09!61;UBERON:0000916!2.92e-09!61;UBERON:0002106!1.51e-08!3;UBERON:0004854!1.51e-08!3;UBERON:0009034!1.51e-08!3;UBERON:0002095!1.51e-08!3;UBERON:0004782!1.51e-08!3;UBERON:0003281!1.51e-08!3;UBERON:0009664!1.51e-08!3;UBERON:0002296!1.51e-08!3;UBERON:0005602!1.51e-08!3;UBERON:0001179!1.51e-08!3;UBERON:0006293!1.51e-08!3;UBERON:0000949!2.57e-08!45;UBERON:0005911!6.18e-07!82;UBERON:0001242!8.14e-07!4;UBERON:0001262!8.14e-07!4;UBERON:0004786!8.14e-07!4;UBERON:0004808!8.14e-07!4;UBERON:0001277!8.14e-07!4;UBERON:0001987!9.63e-07!4;UBERON:0004340!9.63e-07!4 | |ontology_enrichment_uberon=UBERON:0005057!1.91e-21!26;UBERON:0002107!3.82e-19!19;UBERON:0006925!3.82e-19!19;UBERON:0008836!3.82e-19!19;UBERON:0008835!1.33e-16!22;UBERON:0003894!1.33e-16!22;UBERON:0009854!6.71e-16!23;UBERON:0007499!1.15e-14!25;UBERON:0009497!1.15e-14!25;UBERON:0000015!1.15e-14!25;UBERON:0002423!1.15e-14!25;UBERON:0006235!1.15e-14!25;UBERON:0004161!1.15e-14!25;UBERON:0009856!4.06e-14!26;UBERON:0002365!6.57e-12!31;UBERON:0002330!6.57e-12!31;UBERON:0002368!1.36e-10!35;UBERON:0003929!1.77e-10!54;UBERON:0005172!2.96e-10!55;UBERON:0005173!2.96e-10!55;UBERON:0002417!2.92e-09!61;UBERON:0000916!2.92e-09!61;UBERON:0002106!1.51e-08!3;UBERON:0004854!1.51e-08!3;UBERON:0009034!1.51e-08!3;UBERON:0002095!1.51e-08!3;UBERON:0004782!1.51e-08!3;UBERON:0003281!1.51e-08!3;UBERON:0009664!1.51e-08!3;UBERON:0002296!1.51e-08!3;UBERON:0005602!1.51e-08!3;UBERON:0001179!1.51e-08!3;UBERON:0006293!1.51e-08!3;UBERON:0000949!2.57e-08!45;UBERON:0005911!6.18e-07!82;UBERON:0001242!8.14e-07!4;UBERON:0001262!8.14e-07!4;UBERON:0004786!8.14e-07!4;UBERON:0004808!8.14e-07!4;UBERON:0001277!8.14e-07!4;UBERON:0001987!9.63e-07!4;UBERON:0004340!9.63e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.82e-42;19!UBERON:0006925;3.82e-42;19!UBERON:0002423;2.66e-32;25!UBERON:0002368;1.08e-23;33!UBERON:0002365;1.09e-23;31!UBERON:0002330;1.09e-23;31!UBERON:0000949;1.40e-15;43!UBERON:0002417;4.70e-10;58!UBERON:0000916;4.70e-10;58!UBERON:0005172;1.94e-09;52!UBERON:0005173;1.94e-09;52!UBERON:0002530;1.97e-09;57 | |ontology_enrichment_uberon_v019=UBERON:0002107;3.82e-42;19!UBERON:0006925;3.82e-42;19!UBERON:0002423;2.66e-32;25!UBERON:0002368;1.08e-23;33!UBERON:0002365;1.09e-23;31!UBERON:0002330;1.09e-23;31!UBERON:0000949;1.40e-15;43!UBERON:0002417;4.70e-10;58!UBERON:0000916;4.70e-10;58!UBERON:0005172;1.94e-09;52!UBERON:0005173;1.94e-09;52!UBERON:0002530;1.97e-09;57 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.83e-42,19;UBERON:0006925,3.83e-42,19;UBERON:0008836,3.83e-42,19;UBERON:0008835,1.49e-36,22;UBERON:0003894,1.49e-36,22;UBERON:0009854,5.16e-35,23;UBERON:0007499,2.66e-32,25;UBERON:0009497,2.66e-32,25;UBERON:0000015,2.66e-32,25;UBERON:0002423,2.66e-32,25;UBERON:0006235,2.66e-32,25;UBERON:0004161,2.66e-32,25;UBERON:0009856,4.21e-31,26;UBERON:0002365,2.93e-26,31;UBERON:0002330,2.93e-26,31;UBERON:0002368,2.23e-23,35;UBERON:0000949,2.09e-18,45;UBERON:0003929,1.70e-15,54;UBERON:0005172,1.70e-15,54;UBERON:0005173,1.70e-15,54;UBERON:0002530,2.92e-14,59;UBERON:0002417,4.87e-14,60;UBERON:0000916,4.87e-14,60;UBERON:0005911,1.66e-10,82;UBERON:0001041,5.98e-10,87;UBERON:0005177,1.11e-08,101;UBERON:0009569,6.64e-08,112;UBERON:0003914,1.34e-07,117;UBERON:0004921,1.75e-07,118;UBERON:0005256,2.56e-07,122 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10296455230113,1.7307330260045,1.95470277177136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65013777824443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10296455230113,1.7307330260045,1.95470277177136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65013777824443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chrX:152911654..152911663,+ | |short_description=p@chrX:152911654..152911663,+ | ||
}} | }} |
Latest revision as of 06:49, 1 August 2015
Short description: | p@chrX:152911654..152911663, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chrX:152911654..152911663, + |
Coexpression cluster: | C786_liver_hepatocellular_placenta_hepatoblastoma_normal_Intestinal_Wilms |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.26e-37 | 12 |
endodermal cell | 1.46e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 3.83e-42 | 19 |
digestive gland | 3.83e-42 | 19 |
liver bud | 3.83e-42 | 19 |
hepatic diverticulum | 1.49e-36 | 22 |
liver primordium | 1.49e-36 | 22 |
digestive tract diverticulum | 5.16e-35 | 23 |
epithelial sac | 2.66e-32 | 25 |
epithelium of foregut-midgut junction | 2.66e-32 | 25 |
anatomical boundary | 2.66e-32 | 25 |
hepatobiliary system | 2.66e-32 | 25 |
foregut-midgut junction | 2.66e-32 | 25 |
septum transversum | 2.66e-32 | 25 |
sac | 4.21e-31 | 26 |
exocrine gland | 2.93e-26 | 31 |
exocrine system | 2.93e-26 | 31 |
endocrine gland | 2.23e-23 | 35 |
endocrine system | 2.09e-18 | 45 |
gut epithelium | 1.70e-15 | 54 |
abdomen element | 1.70e-15 | 54 |
abdominal segment element | 1.70e-15 | 54 |
gland | 2.92e-14 | 59 |
abdominal segment of trunk | 4.87e-14 | 60 |
abdomen | 4.87e-14 | 60 |
endo-epithelium | 1.66e-10 | 82 |
foregut | 5.98e-10 | 87 |
trunk region element | 1.11e-08 | 101 |
subdivision of trunk | 6.64e-08 | 112 |
epithelial tube | 1.34e-07 | 117 |
subdivision of digestive tract | 1.75e-07 | 118 |
trunk mesenchyme | 2.56e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 2.67e-12 | 39 |