FFCP PHASE1:Mm9::chr7:116902855..116902862,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1723 | |MCL_coexpression_id=1723 | ||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:116902855..116902862,- | |||
|description=CAGE_peak_at_chr7:116902855..116902862,- | |description=CAGE_peak_at_chr7:116902855..116902862,- | ||
|id=chr7:116902855..116902862,- | |id=chr7:116902855..116902862,- | ||
|ontology_enrichment_celltype=CL:0000117!7.24e-15!23;CL:0000337!7.24e-15!23;CL:0000540!2.49e-11!33;CL:0000047!2.49e-11!33;CL:0000031!2.49e-11!33;CL:0000404!2.49e-11!33;CL:0000393!1.04e-10!39;CL:0000211!1.04e-10!39;CL:0002610!1.67e-09!3;CL:0002614!2.14e-09!3;CL:0002319!4.84e-08!43;CL:0000221!8.52e-08!44;CL:0000133!8.52e-08!44;CL:0000055!1.11e-07!50 | |ontology_enrichment_celltype=CL:0000117!7.24e-15!23;CL:0000337!7.24e-15!23;CL:0000540!2.49e-11!33;CL:0000047!2.49e-11!33;CL:0000031!2.49e-11!33;CL:0000404!2.49e-11!33;CL:0000393!1.04e-10!39;CL:0000211!1.04e-10!39;CL:0002610!1.67e-09!3;CL:0002614!2.14e-09!3;CL:0002319!4.84e-08!43;CL:0000221!8.52e-08!44;CL:0000133!8.52e-08!44;CL:0000055!1.11e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0002614,1.59e-20,3;CL:0002610,2.49e-20,3;CL:0000117,2.72e-16,23;CL:0000337,2.72e-16,23;CL:0000540,1.68e-11,33;CL:0000047,1.68e-11,33;CL:0000031,1.68e-11,33;CL:0000404,1.68e-11,33;CL:0000393,8.49e-10,39;CL:0000211,8.49e-10,39;CL:0002319,6.37e-09,43;CL:0000221,9.96e-09,44;CL:0000133,9.96e-09,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002616!6.61e-20!49;UBERON:0000955!2.07e-19!50;UBERON:0006238!2.07e-19!50;UBERON:0001049!2.65e-18!52;UBERON:0005068!2.65e-18!52;UBERON:0006241!2.65e-18!52;UBERON:0007135!2.65e-18!52;UBERON:0001017!4.74e-18!73;UBERON:0005743!4.74e-18!73;UBERON:0000073!2.03e-17!75;UBERON:0001016!2.03e-17!75;UBERON:0002020!9.14e-15!34;UBERON:0000033!2.10e-14!63;UBERON:0002346!1.54e-13!71;UBERON:0003075!1.54e-13!71;UBERON:0007284!1.54e-13!71;UBERON:0004121!2.03e-12!102;UBERON:0000924!2.03e-12!102;UBERON:0006601!2.03e-12!102;UBERON:0003080!7.35e-12!40;UBERON:0002298!1.47e-11!6;UBERON:0002950!2.24e-11!4;UBERON:0001891!2.24e-11!4;UBERON:0009616!2.24e-11!4;UBERON:0002791!5.70e-11!29;UBERON:0003528!5.70e-11!29;UBERON:0001893!5.70e-11!29;UBERON:0002780!1.27e-10!39;UBERON:0001890!1.27e-10!39;UBERON:0006240!1.27e-10!39;UBERON:0004684!1.67e-09!3;UBERON:0002275!1.67e-09!3;UBERON:0002038!2.14e-09!3;UBERON:0002308!2.14e-09!3;UBERON:0009663!2.14e-09!3;UBERON:0009661!2.14e-09!3;UBERON:0006331!2.14e-09!3;UBERON:0000125!2.14e-09!3;UBERON:0007811!2.85e-09!86;UBERON:0003056!4.50e-09!49;UBERON:0002420!2.65e-08!8;UBERON:0007245!2.65e-08!8;UBERON:0010009!2.65e-08!8;UBERON:0010011!2.65e-08!8;UBERON:0000454!2.65e-08!8;UBERON:0000153!4.39e-08!94;UBERON:0003076!1.25e-07!12;UBERON:0003057!1.25e-07!12;UBERON:0000025!2.24e-07!114;UBERON:0002021!9.73e-07!10;UBERON:0000411!9.73e-07!10;UBERON:0001950!9.73e-07!10 | |ontology_enrichment_uberon=UBERON:0002616!6.61e-20!49;UBERON:0000955!2.07e-19!50;UBERON:0006238!2.07e-19!50;UBERON:0001049!2.65e-18!52;UBERON:0005068!2.65e-18!52;UBERON:0006241!2.65e-18!52;UBERON:0007135!2.65e-18!52;UBERON:0001017!4.74e-18!73;UBERON:0005743!4.74e-18!73;UBERON:0000073!2.03e-17!75;UBERON:0001016!2.03e-17!75;UBERON:0002020!9.14e-15!34;UBERON:0000033!2.10e-14!63;UBERON:0002346!1.54e-13!71;UBERON:0003075!1.54e-13!71;UBERON:0007284!1.54e-13!71;UBERON:0004121!2.03e-12!102;UBERON:0000924!2.03e-12!102;UBERON:0006601!2.03e-12!102;UBERON:0003080!7.35e-12!40;UBERON:0002298!1.47e-11!6;UBERON:0002950!2.24e-11!4;UBERON:0001891!2.24e-11!4;UBERON:0009616!2.24e-11!4;UBERON:0002791!5.70e-11!29;UBERON:0003528!5.70e-11!29;UBERON:0001893!5.70e-11!29;UBERON:0002780!1.27e-10!39;UBERON:0001890!1.27e-10!39;UBERON:0006240!1.27e-10!39;UBERON:0004684!1.67e-09!3;UBERON:0002275!1.67e-09!3;UBERON:0002038!2.14e-09!3;UBERON:0002308!2.14e-09!3;UBERON:0009663!2.14e-09!3;UBERON:0009661!2.14e-09!3;UBERON:0006331!2.14e-09!3;UBERON:0000125!2.14e-09!3;UBERON:0007811!2.85e-09!86;UBERON:0003056!4.50e-09!49;UBERON:0002420!2.65e-08!8;UBERON:0007245!2.65e-08!8;UBERON:0010009!2.65e-08!8;UBERON:0010011!2.65e-08!8;UBERON:0000454!2.65e-08!8;UBERON:0000153!4.39e-08!94;UBERON:0003076!1.25e-07!12;UBERON:0003057!1.25e-07!12;UBERON:0000025!2.24e-07!114;UBERON:0002021!9.73e-07!10;UBERON:0000411!9.73e-07!10;UBERON:0001950!9.73e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.59e-20,3;UBERON:0009663,1.59e-20,3;UBERON:0009661,1.59e-20,3;UBERON:0000125,1.59e-20,3;UBERON:0002308,1.59e-20,3;UBERON:0004684,2.49e-20,3;UBERON:0002275,2.49e-20,3;UBERON:0002950,1.13e-15,4;UBERON:0001891,1.13e-15,4;UBERON:0009616,1.13e-15,4;UBERON:0010286,1.13e-15,4;UBERON:0000073,4.19e-10,54;UBERON:0002420,2.44e-08,8;UBERON:0007245,2.44e-08,8;UBERON:0010009,2.44e-08,8;UBERON:0010011,2.44e-08,8;UBERON:0000454,2.44e-08,8;UBERON:0001017,1.48e-07,73;UBERON:0002020,2.18e-07,34;UBERON:0001016,2.31e-07,75 | |||
|phase1_expression=0,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257259436035947,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0.662605622854841,0,0,0,1.10115880999389,2.68143409978894,0.768032666281217,0.263772575460388,0.0914876436024097,0,1.67509799400829,0.56276261003168,1.83357897332172,0,1.13897344639282,0.372798891650601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0.149790639404823,0,0,0,0,0.62336413367868,0.648965052271031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.937693492737625,0,0,0.315508219416257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0.170870880797853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,0.460325236507177,0.572895513439397,0,0,0,0.675022500231806,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192906610981141,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257259436035947,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0.662605622854841,0,0,0,1.10115880999389,2.68143409978894,0.768032666281217,0.263772575460388,0.0914876436024097,0,1.67509799400829,0.56276261003168,1.83357897332172,0,1.13897344639282,0.372798891650601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0.149790639404823,0,0,0,0,0.62336413367868,0.648965052271031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.937693492737625,0,0,0.315508219416257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0.170870880797853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,0.460325236507177,0.572895513439397,0,0,0,0.675022500231806,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192906610981141,0,0,0,0,0,0 | ||
|short_description=p@chr7:116902855..116902862,- | |short_description=p@chr7:116902855..116902862,- | ||
}} | }} |
Latest revision as of 00:48, 4 August 2015
Short description: | p@chr7:116902855..116902862, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:116902855..116902862, - |
Coexpression cluster: | MCL_coexpression_mm9:1723 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the substantia nigra | 1.59e-20 | 3 |
raphe nuclei neuron | 2.49e-20 | 3 |
CNS neuron (sensu Vertebrata) | 2.72e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.72e-16 | 23 |
neuron | 1.68e-11 | 33 |
neuronal stem cell | 1.68e-11 | 33 |
neuroblast | 1.68e-11 | 33 |
electrically signaling cell | 1.68e-11 | 33 |
electrically responsive cell | 8.49e-10 | 39 |
electrically active cell | 8.49e-10 | 39 |
neural cell | 6.37e-09 | 43 |
ectodermal cell | 9.96e-09 | 44 |
neurectodermal cell | 9.96e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 1.59e-20 | 3 |
telencephalic nucleus | 1.59e-20 | 3 |
midbrain nucleus | 1.59e-20 | 3 |
neural nucleus | 1.59e-20 | 3 |
nucleus of brain | 1.59e-20 | 3 |
raphe nuclei | 2.49e-20 | 3 |
reticular formation | 2.49e-20 | 3 |
regional part of midbrain | 1.13e-15 | 4 |
midbrain | 1.13e-15 | 4 |
presumptive midbrain | 1.13e-15 | 4 |
midbrain neural tube | 1.13e-15 | 4 |
regional part of nervous system | 4.19e-10 | 54 |
basal ganglion | 2.44e-08 | 8 |
nuclear complex of neuraxis | 2.44e-08 | 8 |
aggregate regional part of brain | 2.44e-08 | 8 |
collection of basal ganglia | 2.44e-08 | 8 |
cerebral subcortex | 2.44e-08 | 8 |
central nervous system | 1.48e-07 | 73 |
gray matter | 2.18e-07 | 34 |
nervous system | 2.31e-07 | 75 |