FFCP PHASE1:Hg19::chr11:116703695..116703715,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=345 | |EntrezGene=345 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=610 | |HGNC=610 | ||
|TSSclassifier=strong | |||
|UniProt=P02656 | |UniProt=P02656 | ||
|association_with_transcript=163bp_to_V01513_5end | |association_with_transcript=163bp_to_V01513_5end | ||
|cluster_id=chr11:116703695..116703715,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_4_at_APOC3_5end | |description=CAGE_peak_4_at_APOC3_5end | ||
|id=chr11:116703695..116703715,+ | |id=chr11:116703695..116703715,+ | ||
|ontology_enrichment_celltype=CL:0000181!6.66e-22!12;CL:0000417!6.66e-22!12;CL:0000668!6.66e-22!12;CL:0000414!6.66e-22!12;CL:0000412!6.66e-22!12;CL:0000182!6.66e-22!12;CL:0000223!4.81e-08!59 | |ontology_enrichment_celltype=CL:0000181!6.66e-22!12;CL:0000417!6.66e-22!12;CL:0000668!6.66e-22!12;CL:0000414!6.66e-22!12;CL:0000412!6.66e-22!12;CL:0000182!6.66e-22!12;CL:0000223!4.81e-08!59 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.30e-14;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.30e-14,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.54e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.26e-26!19;UBERON:0006925!1.26e-26!19;UBERON:0008836!1.26e-26!19;UBERON:0008835!6.43e-23!22;UBERON:0003894!6.43e-23!22;UBERON:0009854!6.75e-22!23;UBERON:0007499!4.25e-20!25;UBERON:0009497!4.25e-20!25;UBERON:0000015!4.25e-20!25;UBERON:0002423!4.25e-20!25;UBERON:0006235!4.25e-20!25;UBERON:0004161!4.25e-20!25;UBERON:0005057!2.65e-19!26;UBERON:0009856!2.65e-19!26;UBERON:0002365!4.33e-16!31;UBERON:0002330!4.33e-16!31;UBERON:0003929!1.24e-14!54;UBERON:0002368!3.53e-14!35;UBERON:0004921!1.04e-11!129;UBERON:0004185!1.04e-11!129;UBERON:0000949!7.00e-11!45;UBERON:0002530!1.63e-10!59;UBERON:0001007!1.98e-09!155;UBERON:0001555!1.98e-09!155;UBERON:0007026!1.98e-09!155;UBERON:0000160!3.03e-09!27;UBERON:0005911!3.07e-09!82;UBERON:0005172!8.89e-09!55;UBERON:0005173!8.89e-09!55;UBERON:0004119!1.73e-08!169;UBERON:0000925!1.73e-08!169;UBERON:0006595!1.73e-08!169;UBERON:0002417!7.60e-08!61;UBERON:0000916!7.60e-08!61;UBERON:0005409!3.68e-07!35;UBERON:0002108!7.50e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;5.22e-24;19!UBERON:0006925;5.22e-24;19!UBERON:0002423;2.70e-18;25!UBERON:0002108;3.61e-15;4!UBERON:0002365;9.48e-15;31!UBERON:0002330;9.48e-15;31!UBERON:0002368;8.42e-13;33!UBERON:0000160;1.62e-09;17!UBERON:0000949;2.41e-09;43!UBERON:0001007;2.49e-09;81!UBERON:0005409;1.43e-07;22!UBERON:0005172;8.13e-07;52!UBERON:0005173;8.13e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,5.35e-24,19;UBERON:0006925,5.35e-24,19;UBERON:0008836,5.35e-24,19;UBERON:0008835,9.36e-21,22;UBERON:0003894,9.36e-21,22;UBERON:0009854,7.33e-20,23;UBERON:0007499,2.75e-18,25;UBERON:0009497,2.75e-18,25;UBERON:0000015,2.75e-18,25;UBERON:0002423,2.75e-18,25;UBERON:0006235,2.75e-18,25;UBERON:0004161,2.75e-18,25;UBERON:0009856,1.37e-17,26;UBERON:0002108,3.35e-15,4;UBERON:0002365,8.91e-15,31;UBERON:0002330,8.91e-15,31;UBERON:0002368,4.22e-13,35;UBERON:0003929,5.95e-12,54;UBERON:0000949,3.30e-10,45;UBERON:0000160,1.62e-09,17;UBERON:0004921,3.17e-09,118;UBERON:0005172,1.64e-08,54;UBERON:0005173,1.64e-08,54;UBERON:0005911,8.26e-08,82;UBERON:0002530,8.60e-08,59;UBERON:0002417,1.16e-07,60;UBERON:0000916,1.16e-07,60;UBERON:0001007,2.05e-07,145;UBERON:0001555,2.05e-07,145;UBERON:0007026,2.05e-07,145;UBERON:0005409,9.25e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.1536580090211,3.9313088667105,21.859226547212,0,1.10689594688802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.38854272215878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.19051066757979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0.234264445725339,0,0,0,0,2.41981432097328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05173127149315,14.5757577803443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15761237161917,1.31135736302374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.1536580090211,3.9313088667105,21.859226547212,0,1.10689594688802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.38854272215878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.19051066757979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0.234264445725339,0,0,0,0,2.41981432097328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05173127149315,14.5757577803443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15761237161917,1.31135736302374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@APOC3 | |short_description=p4@APOC3 | ||
}} | }} |
Latest revision as of 19:40, 15 September 2015
Short description: | p4@APOC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_APOC3_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 163bp_to_V01513_5end |
EntrezGene: | APOC3 |
HGNC: | 610 |
UniProt: | P02656 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.30e-14 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 5.35e-24 | 19 |
digestive gland | 5.35e-24 | 19 |
liver bud | 5.35e-24 | 19 |
hepatic diverticulum | 9.36e-21 | 22 |
liver primordium | 9.36e-21 | 22 |
digestive tract diverticulum | 7.33e-20 | 23 |
epithelial sac | 2.75e-18 | 25 |
epithelium of foregut-midgut junction | 2.75e-18 | 25 |
anatomical boundary | 2.75e-18 | 25 |
hepatobiliary system | 2.75e-18 | 25 |
foregut-midgut junction | 2.75e-18 | 25 |
septum transversum | 2.75e-18 | 25 |
sac | 1.37e-17 | 26 |
small intestine | 3.35e-15 | 4 |
exocrine gland | 8.91e-15 | 31 |
exocrine system | 8.91e-15 | 31 |
endocrine gland | 4.22e-13 | 35 |
gut epithelium | 5.95e-12 | 54 |
endocrine system | 3.30e-10 | 45 |
intestine | 1.62e-09 | 17 |
subdivision of digestive tract | 3.17e-09 | 118 |
abdomen element | 1.64e-08 | 54 |
abdominal segment element | 1.64e-08 | 54 |
endo-epithelium | 8.26e-08 | 82 |
gland | 8.60e-08 | 59 |
abdominal segment of trunk | 1.16e-07 | 60 |
abdomen | 1.16e-07 | 60 |
digestive system | 2.05e-07 | 145 |
digestive tract | 2.05e-07 | 145 |
primitive gut | 2.05e-07 | 145 |
gastrointestinal system | 9.25e-07 | 25 |