FFCP PHASE1:Hg19::chr3:149087248..149087262,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4071 | |EntrezGene=4071 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11853 | |HGNC=11853 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-293bp_to_X75684_5end | |association_with_transcript=-293bp_to_X75684_5end | ||
|cluster_id=chr3:149087248..149087262,- | |||
|coexpression_cluster_id=C2724 | |coexpression_cluster_id=C2724 | ||
|description=CAGE_peak_3_at_TM4SF1_5end | |description=CAGE_peak_3_at_TM4SF1_5end | ||
|id=chr3:149087248..149087262,- | |id=chr3:149087248..149087262,- | ||
|ontology_enrichment_celltype=CL:0000066!3.88e-17!254;CL:0000222!1.53e-16!119;CL:0000213!6.00e-13!57;CL:0000215!6.00e-13!57;CL:0000220!2.12e-12!246;CL:0002321!6.01e-12!248;CL:0002139!3.18e-10!24;CL:0000076!4.75e-10!62;CL:0002078!2.32e-08!44;CL:0000115!2.45e-07!35;CL:0000077!7.11e-07!19;CL:0000071!9.85e-07!18;CL:0002546!9.85e-07!18 | |ontology_enrichment_celltype=CL:0000066!3.88e-17!254;CL:0000222!1.53e-16!119;CL:0000213!6.00e-13!57;CL:0000215!6.00e-13!57;CL:0000220!2.12e-12!246;CL:0002321!6.01e-12!248;CL:0002139!3.18e-10!24;CL:0000076!4.75e-10!62;CL:0002078!2.32e-08!44;CL:0000115!2.45e-07!35;CL:0000077!7.11e-07!19;CL:0000071!9.85e-07!18;CL:0002546!9.85e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002139;2.23e-11;24!CL:0002138;7.11e-09;6!CL:0000115;1.45e-08;36!CL:0000213;3.76e-07;58!CL:0000215;3.76e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000213,2.31e-12,58;CL:0000215,2.31e-12,58;CL:0000066,1.43e-11,253;CL:0002139,2.19e-11,24;CL:0000115,2.96e-09,36;CL:0002078,3.28e-09,45;CL:0005020,3.97e-09,6;CL:0002138,3.97e-09,6;CL:0005022,3.97e-09,6;CL:0000222,1.00e-08,121 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.74e-10;29!CL:0005022;7.11e-09;6 | |||
|ontology_enrichment_disease=DOID:305!3.18e-10!106;DOID:0050687!8.16e-07!143 | |ontology_enrichment_disease=DOID:305!3.18e-10!106;DOID:0050687!8.16e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:2394;3.11e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.70e-12,106;DOID:0050687,8.31e-09,143;DOID:2394,2.31e-07,14;DOID:14566,4.83e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0003914!2.83e-16!118;UBERON:0000477!3.66e-16!286;UBERON:0000055!1.14e-13!69;UBERON:0002049!1.81e-13!79;UBERON:0007798!1.81e-13!79;UBERON:0003104!6.68e-13!238;UBERON:0009142!6.68e-13!238;UBERON:0004872!2.19e-12!84;UBERON:0001981!3.66e-12!60;UBERON:0007500!3.66e-12!60;UBERON:0004537!3.66e-12!60;UBERON:0006965!3.66e-12!60;UBERON:0000490!5.51e-12!138;UBERON:0000481!9.39e-12!347;UBERON:0004111!1.13e-11!241;UBERON:0000119!1.85e-11!312;UBERON:0000483!2.22e-11!309;UBERON:0001009!1.23e-09!113;UBERON:0004535!1.49e-09!110;UBERON:0005256!4.06e-09!143;UBERON:0001637!1.56e-08!42;UBERON:0003509!1.56e-08!42;UBERON:0004572!1.56e-08!42;UBERON:0000025!1.58e-08!194;UBERON:0006914!1.81e-08!25;UBERON:0001737!2.38e-08!9;UBERON:0000487!2.61e-08!22;UBERON:0004573!3.07e-08!33;UBERON:0004571!3.07e-08!33;UBERON:0000926!3.96e-08!448;UBERON:0004120!3.96e-08!448;UBERON:0006603!3.96e-08!448;UBERON:0000467!4.98e-08!625;UBERON:0000480!6.89e-08!626;UBERON:0002100!2.96e-07!216;UBERON:0000947!5.44e-07!21;UBERON:0010191!5.44e-07!21;UBERON:0001986!9.85e-07!18;UBERON:0004638!9.85e-07!18;UBERON:0004852!9.85e-07!18 | |ontology_enrichment_uberon=UBERON:0003914!2.83e-16!118;UBERON:0000477!3.66e-16!286;UBERON:0000055!1.14e-13!69;UBERON:0002049!1.81e-13!79;UBERON:0007798!1.81e-13!79;UBERON:0003104!6.68e-13!238;UBERON:0009142!6.68e-13!238;UBERON:0004872!2.19e-12!84;UBERON:0001981!3.66e-12!60;UBERON:0007500!3.66e-12!60;UBERON:0004537!3.66e-12!60;UBERON:0006965!3.66e-12!60;UBERON:0000490!5.51e-12!138;UBERON:0000481!9.39e-12!347;UBERON:0004111!1.13e-11!241;UBERON:0000119!1.85e-11!312;UBERON:0000483!2.22e-11!309;UBERON:0001009!1.23e-09!113;UBERON:0004535!1.49e-09!110;UBERON:0005256!4.06e-09!143;UBERON:0001637!1.56e-08!42;UBERON:0003509!1.56e-08!42;UBERON:0004572!1.56e-08!42;UBERON:0000025!1.58e-08!194;UBERON:0006914!1.81e-08!25;UBERON:0001737!2.38e-08!9;UBERON:0000487!2.61e-08!22;UBERON:0004573!3.07e-08!33;UBERON:0004571!3.07e-08!33;UBERON:0000926!3.96e-08!448;UBERON:0004120!3.96e-08!448;UBERON:0006603!3.96e-08!448;UBERON:0000467!4.98e-08!625;UBERON:0000480!6.89e-08!626;UBERON:0002100!2.96e-07!216;UBERON:0000947!5.44e-07!21;UBERON:0010191!5.44e-07!21;UBERON:0001986!9.85e-07!18;UBERON:0004638!9.85e-07!18;UBERON:0004852!9.85e-07!18 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.74e-15;9!UBERON:0001557;4.74e-15;9!UBERON:0000487;5.96e-08;22!UBERON:0006914;7.40e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.80e-15,9;UBERON:0000055,2.67e-11,68;UBERON:0003914,5.77e-10,117;UBERON:0001557,9.83e-10,19;UBERON:0002049,1.40e-09,78;UBERON:0007798,1.40e-09,78;UBERON:0007500,6.23e-08,59;UBERON:0001981,6.23e-08,59;UBERON:0004537,6.23e-08,59;UBERON:0006965,6.23e-08,59;UBERON:0000487,8.73e-08,22;UBERON:0006914,1.07e-07,25;UBERON:0004872,1.26e-07,83;UBERON:0001009,1.30e-07,112;UBERON:0004535,1.93e-07,109;UBERON:0008947,2.02e-07,38;UBERON:0003258,2.02e-07,38;UBERON:0001637,3.86e-07,42;UBERON:0003509,3.86e-07,42;UBERON:0004572,3.86e-07,42 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0.631719873426831,0,0.245733936501509,1.39560233594486,0,0,1.48519623552056,2.31978163009541,2.6893005858071,0.602694528023977,2.92124036154949,1.95173119516203,0,0.204000691244253,0,0,0.136874425072884,0.753255837568817,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,2.1686349143074,1.50401373190767,3.33146993609895,0,1.45990461090791,0,0,0.263504357079378,0.261958150995425,0.364295288292542,0.370784442784429,0,0,0,0,0,0,1.19257444420023,0.860234595106124,1.04142150482278,0,2.51699661725944,1.37559020970034,1.67195973229448,3.87625138753993,2.49036383880697,1.67360306382335,2.01414658554573,0.760272105718513,3.1728067481262,0.735326160691737,2.43042584364528,3.92918804449951,0.898117490504679,0.900891843866578,0,0.949265659568129,1.28241220751285,0,0,0.436094052142534,0.993943903390637,1.39293562831038,0.264818361626438,1.72101972449288,2.4826786753885,0.560677600142307,2.1349799145941,0.49333509683432,0.933633106199299,0.942974704487816,1.79808093424805,0.302714855289863,0.576175924479999,0,1.24864030732128,0,0.896692083310806,0.352303495931295,0,0,0,0.737005903870608,0,0,0.741800787835671,0,0,0.168336113954066,0.750711119231785,0,0,0,0.751190294532984,1.92834711372036,1.07633781413317,0,0.211931901159562,1.50045548042201,0,0.257640540045629,0.37223371266318,0.506328996723799,0.292311015483596,0.252433774244115,0.276149695926898,0,0.710019185033229,0.503760491138201,1.18692414617341,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,7.57163520255001,7.08055698328027,5.3022426574366,10.5882213823098,6.53638332277218,2.84724742933316,7.68538456512937,6.67152981426177,6.92544882503503,0.738155454624648,0,0.8231480226628,0,0,0,0,0,0.983907508344908,0.343135620597051,1.20725313949488,0,0.502644862058154,0.277765335475589,0,2.07986957055916,0,0,0,2.30986316417718,3.70388410061289,3.99533719692656,0,0,0,0,0,0,0.16798212819886,0.567100388969546,0.447792613514241,0.290633938513962,1.15014803749563,0,0,0,0,0,0,0,0,0,0.102827492703324,0.300343057843917,0,0.224262168690721,0,0.80672114403045,0,0,1.690605505112,0,0,0.257207374262142,1.41849132023278,1.3321108950805,0.428933980974443,0.542621605391443,0,0,0,0.791951872933429,0.301439377059586,0.871533458600294,7.99783929456456,0,0,0,0.479249710983165,0,1.42636905040718,0.144781306667579,0.61642896765115,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0.981531933753119,1.00034104211935,0.542530047399471,0.207970861530807,0.892144943985809,0.157702415033935,0.117141414992713,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.616838775210622,0,0.164254312027618,0.519254429183621,0.697262270759755,0.483437798366489,1.00253235151642,0.276242966807689,0.34444334449382,0.182091168006717,0.262248829918848,0,0.693138033939733,0.784349769176855,1.46139224653261,0.105551628892876,2.27466768141793,0.510281115829547,1.94324324491925,0,0,0,0.509752546090077,0,0.447749509444357,0,0,0.512900250232778,2.29610251989794,0.976135183992909,0.103041011647722,0,0,0,0.650060246036521,3.21367859688319,0.096670718292122,0.308097234229289,0.767518373630648,0.275673144969061,0.751941714077915,1.16013355131383,0.426133137080504,0,0.495854746082934,0.192190067365106,0,0.10115778085555,0.929691098594572,0.94443704049192,1.3940745403212,0.308033580176089,0,0.869932992075073,0.9266210955196,0,0.744316738719335,1.89827654831236,0.571890581771475,0,0.42793898803392,0.318203247925937,0.78494864019923,0,0.274537029736055,0.353437207037059,0.404364963146632,4.75530963519025,0.421258456238981,0,3.65570234446927,0,0,0.424216295861138,0,0,3.98063385144732,3.06915619677634,0.578775534266688,1.31178950409327,0.202910376962704,0,0.563391205064483,0.860468113224309,0.294747123039363,0,1.41904425628239,2.32218398827431,0.987884678879706,0,0,0.0962221127255121,0,0,0.188287601553558,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,5.87532391201102,0,0.490080431962063,0,0,0,0,0,0.383010740264733,0.211673582723883,0,0.842391534340376,0,0,0,0.50787533340481,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,2.55722532125772,0.23874448473769,0.296964680832639,0.307160702099232,0,0,0.667852230137435,0.16480387422676,0,1.39473591775749,0,0,0,0,0.933118762985422,1.61763032065188,3.9384658428634,0,0.197286811273867,0,0,0,0.371072392647405,0,0,0.787139999965761,0,1.4793148277115,2.03402920234213,1.18193840883968,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0.219385397153973,0,0.139423744278603,0,0.455768223388005,0,0,0,0.638002319463839,0.0915975934018623,1.5991043280559,0,0.627921025580099,0,0,0,0,0,0,12.8708819362096,0.979396848954886,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,2.18502341580683,0,0,0.30607276163049,0.252746318513952,0,0,0,0.661983911750998,0,0,0.284609546029793,0.970722711091971,0.173559738335131,0.391969589657511,0.174118413160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| ||
|short_description=p3@TM4SF1 | |short_description=p3@TM4SF1 | ||
}} | }} |
Latest revision as of 21:20, 15 September 2015
Short description: | p3@TM4SF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TM4SF1_5end |
Coexpression cluster: | C2724_Hep2_epitheloid_giant_Lymphatic_large_clear_Mesothelial |
Association with transcript: | -293bp_to_X75684_5end |
EntrezGene: | TM4SF1 |
HGNC: | 11853 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 2.31e-12 | 58 |
barrier cell | 2.31e-12 | 58 |
epithelial cell | 1.43e-11 | 253 |
endothelial cell of vascular tree | 2.19e-11 | 24 |
endothelial cell | 2.96e-09 | 36 |
meso-epithelial cell | 3.28e-09 | 45 |
lymphangioblast | 3.97e-09 | 6 |
endothelial cell of lymphatic vessel | 3.97e-09 | 6 |
vascular lymphangioblast | 3.97e-09 | 6 |
mesodermal cell | 1.00e-08 | 121 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.80e-15 | 9 |
vessel | 2.67e-11 | 68 |
epithelial tube | 5.77e-10 | 117 |
upper respiratory tract | 9.83e-10 | 19 |
vasculature | 1.40e-09 | 78 |
vascular system | 1.40e-09 | 78 |
epithelial tube open at both ends | 6.23e-08 | 59 |
blood vessel | 6.23e-08 | 59 |
blood vasculature | 6.23e-08 | 59 |
vascular cord | 6.23e-08 | 59 |
simple squamous epithelium | 8.73e-08 | 22 |
squamous epithelium | 1.07e-07 | 25 |
splanchnic layer of lateral plate mesoderm | 1.26e-07 | 83 |
circulatory system | 1.30e-07 | 112 |
cardiovascular system | 1.93e-07 | 109 |
respiratory primordium | 2.02e-07 | 38 |
endoderm of foregut | 2.02e-07 | 38 |
artery | 3.86e-07 | 42 |
arterial blood vessel | 3.86e-07 | 42 |
arterial system | 3.86e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.70e-12 | 106 |
cell type cancer | 8.31e-09 | 143 |
ovarian cancer | 2.31e-07 | 14 |
disease of cellular proliferation | 4.83e-07 | 239 |