FFCP PHASE1:Hg19::chr11:119056178..119056200,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79849 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19891 | |||
|TSSclassifier=strong | |||
|UniProt=E9PPZ1,E9PRB0 | |||
|association_with_transcript=0bp_to_ENST00000322712,ENST00000355547,ENST00000525131,ENST00000526279,ENST00000526836,ENST00000527028,ENST00000527951,ENST00000528730,ENST00000529098,ENST00000529573,ENST00000531114,ENST00000533688,ENST00000534790,uc001pvy.2,uc001pvz.2,uc001pwa.2,uc010rzd.1_5end | |||
|cluster_id=chr11:119056178..119056200,+ | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_1_at_PDZD3_5end | |||
|id=chr11:119056178..119056200,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002563;1.73e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.81e-09,4 | |||
|ontology_enrichment_development_v019=UBERON:0006242;3.10e-10;1!UBERON:0001045;5.07e-10;1!UBERON:0003104;8.11e-07;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:299;2.06e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:299,2.09e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0005409!7.33e-20!35;UBERON:0000160!7.09e-19!27;UBERON:0000059!1.68e-15!11;UBERON:0001155!1.92e-13!9;UBERON:0004921!9.85e-10!129;UBERON:0004185!9.85e-10!129;UBERON:0001007!2.16e-09!155;UBERON:0001555!2.16e-09!155;UBERON:0007026!2.16e-09!155;UBERON:0004907!3.37e-09!5;UBERON:0004119!3.21e-08!169;UBERON:0000925!3.21e-08!169;UBERON:0006595!3.21e-08!169;UBERON:0002110!3.13e-07!3;UBERON:0006242!3.13e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.94e-47;17!UBERON:0005409;2.36e-44;22!UBERON:0000059;1.97e-28;11!UBERON:0004921;7.25e-27;33!UBERON:0001155;2.04e-24;9!UBERON:0002108;8.57e-17;4!UBERON:0004907;3.63e-16;5!UBERON:0001154;5.07e-10;1!UBERON:0001153;5.07e-10;1!UBERON:0009854;5.07e-10;1!UBERON:0001555;6.62e-10;54!UBERON:0001301;8.24e-10;1!UBERON:0001052;1.34e-09;4!UBERON:0001242;1.73e-09;4!UBERON:0001262;1.73e-09;4!UBERON:0004786;1.73e-09;4!UBERON:0004808;1.73e-09;4!UBERON:0001277;1.73e-09;4!UBERON:0001007;6.64e-09;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.09e-47,17;UBERON:0005409,5.05e-39,25;UBERON:0000059,2.12e-28,11;UBERON:0001155,2.19e-24,9;UBERON:0002108,8.57e-17,4;UBERON:0004907,3.93e-16,5;UBERON:0004921,3.62e-10,118;UBERON:0001154,5.30e-10,1;UBERON:0001153,5.30e-10,1;UBERON:0001045,5.30e-10,1;UBERON:0001301,7.55e-10,1;UBERON:0001052,1.39e-09,4;UBERON:0001242,1.81e-09,4;UBERON:0001262,1.81e-09,4;UBERON:0004786,1.81e-09,4;UBERON:0004808,1.81e-09,4;UBERON:0001277,1.81e-09,4;UBERON:0001007,2.63e-09,145;UBERON:0001555,2.63e-09,145;UBERON:0007026,2.63e-09,145;UBERON:0004119,3.25e-08,160;UBERON:0000925,3.25e-08,160;UBERON:0006595,3.25e-08,160;UBERON:0001046,2.02e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35762335895883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.42758378755209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93375119346596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.48562161632879,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,5.24939439509181,7.80991518348256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12029607150911,0,24.8815482769626,20.345239835768,17.1088440581415,0,0,0,0,0.802577647298789,0,0,0,0,0,21.7783288887595,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44617335538842,0,0,0,0,0,0,0,0,0,0,0.391102765469606,0,9.60538476327087,0,1.58499458869517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0.202210631562555,0.295282444544246,0,0,0,0,0,0,0,0,0,0,5.59520521824307,7.29118775076474,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306345576763462,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,8.21842848458546,0.647782773655864,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90137359943262,0,0,0,0,0,0,0,0,0,0,35.4229385715466,14.2063714327572,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,15.870805215462,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,3.59300808426348,0,0,0,0,0.201273793591026,0 | |||
|short_description=p1@PDZD3 | |||
}} |
Latest revision as of 03:08, 16 September 2015
Short description: | p1@PDZD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDZD3_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000322712, ENST00000355547, ENST00000525131, ENST00000526279, ENST00000526836, ENST00000527028, ENST00000527951, ENST00000528730, ENST00000529098, ENST00000529573, ENST00000531114, ENST00000533688, ENST00000534790, uc001pvy.2, uc001pvz.2, uc001pwa.2, uc010rzd.1_5end |
EntrezGene: | PDZD3 |
HGNC: | 19891 |
UniProt: | E9PPZ1E9PRB0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.81e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.09e-47 | 17 |
gastrointestinal system | 5.05e-39 | 25 |
large intestine | 2.12e-28 | 11 |
colon | 2.19e-24 | 9 |
small intestine | 8.57e-17 | 4 |
lower digestive tract | 3.93e-16 | 5 |
subdivision of digestive tract | 3.62e-10 | 118 |
vermiform appendix | 5.30e-10 | 1 |
caecum | 5.30e-10 | 1 |
midgut | 5.30e-10 | 1 |
epididymis | 7.55e-10 | 1 |
rectum | 1.39e-09 | 4 |
intestinal mucosa | 1.81e-09 | 4 |
wall of intestine | 1.81e-09 | 4 |
gastrointestinal system mucosa | 1.81e-09 | 4 |
gastrointestinal system epithelium | 1.81e-09 | 4 |
intestinal epithelium | 1.81e-09 | 4 |
digestive system | 2.63e-09 | 145 |
digestive tract | 2.63e-09 | 145 |
primitive gut | 2.63e-09 | 145 |
endoderm-derived structure | 3.25e-08 | 160 |
endoderm | 3.25e-08 | 160 |
presumptive endoderm | 3.25e-08 | 160 |
hindgut | 2.02e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 2.09e-08 | 25 |