FFCP PHASE2:Hg19::chr10:105421477..105421518,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:9644 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:23664 |TSSclas...") |
No edit summary |
||
Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=9644 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=23664 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=F5GZ35 | ||
|association_with_transcript=-15bp_to_ENST00000538130_5end | |association_with_transcript=-15bp_to_ENST00000538130_5end | ||
|cluster_id=chr10:105421477..105421518,- | |cluster_id=chr10:105421477..105421518,- |
Latest revision as of 04:05, 16 September 2015
Short description: | p2@SH3PXD2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SH3PXD2A_5end |
Coexpression cluster: | NA |
Association with transcript: | -15bp_to_ENST00000538130_5end |
EntrezGene: | SH3PXD2A |
HGNC: | 23664 |
UniProt: | F5GZ35 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p2@SH3PXD2A |
---|
0
50
100
150
200
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.13e-19 | 76 |
muscle precursor cell | 2.12e-08 | 58 |
myoblast | 2.12e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.12e-08 | 58 |
skin fibroblast | 2.13e-08 | 23 |
muscle cell | 3.94e-08 | 55 |
fat cell | 3.93e-07 | 15 |
Showing 1 to 7 of 7 entries
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.69e-11 | 160 |
entire embryonic mesenchyme | 1.69e-11 | 160 |
dense mesenchyme tissue | 5.52e-11 | 73 |
somite | 8.05e-11 | 71 |
presomitic mesoderm | 8.05e-11 | 71 |
presumptive segmental plate | 8.05e-11 | 71 |
dermomyotome | 8.05e-11 | 71 |
trunk paraxial mesoderm | 8.05e-11 | 71 |
paraxial mesoderm | 1.18e-10 | 72 |
presumptive paraxial mesoderm | 1.18e-10 | 72 |
Showing 1 to 10 of 21 entries