FFCP PHASE1:Hg19::chr11:120008947..120008960,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23650 | |EntrezGene=23650 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17274 | |HGNC=17274 | ||
|TSSclassifier=strong | |||
|UniProt=Q14134 | |UniProt=Q14134 | ||
|association_with_transcript=-84bp_to_NM_012101,uc001pwz.2,uc001pxa.2_5end | |association_with_transcript=-84bp_to_NM_012101,uc001pwz.2,uc001pxa.2_5end | ||
|cluster_id=chr11:120008947..120008960,- | |||
|description=CAGE_peak_12_at_TRIM29_5end | |description=CAGE_peak_12_at_TRIM29_5end | ||
|id=chr11:120008947..120008960,- | |id=chr11:120008947..120008960,- | ||
|ontology_enrichment_celltype=CL:0002076!8.00e-20!43;CL:0000066!3.82e-17!254;CL:0002251!5.63e-15!21;CL:0000223!9.75e-14!59;CL:0002159!1.33e-07!13;CL:0002368!2.19e-07!13;CL:0000240!3.00e-07!6;CL:0000311!3.00e-07!6;CL:0000079!3.00e-07!6;CL:0000237!3.00e-07!6;CL:0000036!3.00e-07!6;CL:0000357!3.00e-07!6;CL:0000114!3.00e-07!6 | |ontology_enrichment_celltype=CL:0002076!8.00e-20!43;CL:0000066!3.82e-17!254;CL:0002251!5.63e-15!21;CL:0000223!9.75e-14!59;CL:0002159!1.33e-07!13;CL:0002368!2.19e-07!13;CL:0000240!3.00e-07!6;CL:0000311!3.00e-07!6;CL:0000079!3.00e-07!6;CL:0000237!3.00e-07!6;CL:0000036!3.00e-07!6;CL:0000357!3.00e-07!6;CL:0000114!3.00e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002328;1.96e-10;3!CL:0002252;1.90e-08;1!CL:0000244;3.06e-08;4!CL:0000731;3.06e-08;4 | |ontology_enrichment_celltype_v019=CL:0002328;1.96e-10;3!CL:0002252;1.90e-08;1!CL:0000244;3.06e-08;4!CL:0000731;3.06e-08;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002328,1.16e-10,3;CL:0000066,1.68e-08,253;CL:0002252,2.29e-08,1;CL:0000244,2.56e-08,4;CL:0000731,2.56e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0000358;7.26e-09;1!UBERON:0009143;7.26e-09;1!UBERON:0008947;2.01e-08;29 | |ontology_enrichment_development_v019=UBERON:0000358;7.26e-09;1!UBERON:0009143;7.26e-09;1!UBERON:0008947;2.01e-08;29 | ||
|ontology_enrichment_disease=DOID:1749!2.62e-13!14;DOID:305!8.86e-13!106;DOID:0050687!4.44e-08!143 | |ontology_enrichment_disease=DOID:1749!2.62e-13!14;DOID:305!8.86e-13!106;DOID:0050687!4.44e-08!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:305,1.80e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0001004!8.21e-26!72;UBERON:0004119!6.15e-21!169;UBERON:0000925!6.15e-21!169;UBERON:0006595!6.15e-21!169;UBERON:0000166!1.61e-17!21;UBERON:0001557!3.34e-17!19;UBERON:0000065!1.59e-16!53;UBERON:0001007!3.50e-16!155;UBERON:0001555!3.50e-16!155;UBERON:0007026!3.50e-16!155;UBERON:0000161!9.68e-16!35;UBERON:0000072!1.84e-15!46;UBERON:0001737!2.85e-15!9;UBERON:0000077!4.69e-15!130;UBERON:0001041!6.63e-14!98;UBERON:0000165!7.51e-14!28;UBERON:0000930!7.51e-14!28;UBERON:0004921!2.67e-13!129;UBERON:0004185!2.67e-13!129;UBERON:0008947!9.22e-11!38;UBERON:0003258!9.22e-11!38;UBERON:0001044!1.35e-10!6;UBERON:0003293!1.35e-10!6;UBERON:0003294!1.35e-10!6;UBERON:0010047!1.35e-10!6;UBERON:0000167!1.35e-10!6;UBERON:0003408!1.17e-09!10;UBERON:0001444!2.69e-08!48;UBERON:0003729!2.78e-08!5;UBERON:0005631!4.57e-08!14;UBERON:0000158!4.57e-08!14;UBERON:0000078!5.09e-08!18;UBERON:0003102!6.48e-08!95;UBERON:0000064!2.94e-07!219;UBERON:0000063!3.93e-07!97 | |ontology_enrichment_uberon=UBERON:0001004!8.21e-26!72;UBERON:0004119!6.15e-21!169;UBERON:0000925!6.15e-21!169;UBERON:0006595!6.15e-21!169;UBERON:0000166!1.61e-17!21;UBERON:0001557!3.34e-17!19;UBERON:0000065!1.59e-16!53;UBERON:0001007!3.50e-16!155;UBERON:0001555!3.50e-16!155;UBERON:0007026!3.50e-16!155;UBERON:0000161!9.68e-16!35;UBERON:0000072!1.84e-15!46;UBERON:0001737!2.85e-15!9;UBERON:0000077!4.69e-15!130;UBERON:0001041!6.63e-14!98;UBERON:0000165!7.51e-14!28;UBERON:0000930!7.51e-14!28;UBERON:0004921!2.67e-13!129;UBERON:0004185!2.67e-13!129;UBERON:0008947!9.22e-11!38;UBERON:0003258!9.22e-11!38;UBERON:0001044!1.35e-10!6;UBERON:0003293!1.35e-10!6;UBERON:0003294!1.35e-10!6;UBERON:0010047!1.35e-10!6;UBERON:0000167!1.35e-10!6;UBERON:0003408!1.17e-09!10;UBERON:0001444!2.69e-08!48;UBERON:0003729!2.78e-08!5;UBERON:0005631!4.57e-08!14;UBERON:0000158!4.57e-08!14;UBERON:0000078!5.09e-08!18;UBERON:0003102!6.48e-08!95;UBERON:0000064!2.94e-07!219;UBERON:0000063!3.93e-07!97 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.42e-19;9!UBERON:0001557;1.42e-19;9!UBERON:0006562;3.44e-15;2!UBERON:0001043;1.05e-10;3!UBERON:0004815;1.96e-10;3!UBERON:0002031;1.96e-10;3!UBERON:0000072;2.02e-10;37!UBERON:0000065;1.71e-08;44!UBERON:0002372;1.90e-08;1!UBERON:0005795;1.90e-08;1!UBERON:0001961;1.90e-08;1!UBERON:0001744;1.90e-08;1!UBERON:0001042;1.90e-08;1!UBERON:0001735;1.90e-08;1!UBERON:0000365;9.41e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0001737;1.42e-19;9!UBERON:0001557;1.42e-19;9!UBERON:0006562;3.44e-15;2!UBERON:0001043;1.05e-10;3!UBERON:0004815;1.96e-10;3!UBERON:0002031;1.96e-10;3!UBERON:0000072;2.02e-10;37!UBERON:0000065;1.71e-08;44!UBERON:0002372;1.90e-08;1!UBERON:0005795;1.90e-08;1!UBERON:0001961;1.90e-08;1!UBERON:0001744;1.90e-08;1!UBERON:0001042;1.90e-08;1!UBERON:0001735;1.90e-08;1!UBERON:0000365;9.41e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.01e-19,9;UBERON:0001557,9.00e-13,19;UBERON:0000072,7.38e-11,47;UBERON:0008947,7.59e-11,38;UBERON:0003258,7.59e-11,38;UBERON:0001043,1.11e-10,3;UBERON:0009143,1.11e-10,3;UBERON:0004815,1.16e-10,3;UBERON:0002031,1.16e-10,3;UBERON:0001041,1.31e-09,87;UBERON:0004119,1.58e-09,160;UBERON:0000925,1.58e-09,160;UBERON:0006595,1.58e-09,160;UBERON:0000065,2.84e-09,54;UBERON:0004921,5.02e-09,118;UBERON:0002372,1.27e-08,1;UBERON:0001961,1.27e-08,1;UBERON:0001744,1.27e-08,1;UBERON:0001735,1.27e-08,1;UBERON:0001007,4.37e-08,145;UBERON:0001555,4.37e-08,145;UBERON:0007026,4.37e-08,145;UBERON:0001004,6.15e-08,74;UBERON:0000365,8.17e-07,5;UBERON:0002185,9.98e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,1.83884244895785,0.30120591877825,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.818238361772504,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0.473227200159376,1.34867752062481,0.482022059766964,0.441175890929576,1.08939722046203,1.42362371466658,1.21348177344148,0.392442930250692,1.15424147083917,0,0,0,0,0,0,0,0,0,0,0.658501712451753,2.24803506515239,0.402115889646523,0.925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503946384596579,0.850650583454319,0.716468181622786,0.290633938513962,0.383382679165211,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460404944679482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576570202095319,0.255225424989168,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0.670302275535787,0,0,2.15252686335615,0,1.7737206141467,0.459446800413919,0,0,0,0,0,0,0,0,0,0,1.96032172784825,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445773537109913,0,0.95497793895076,0.296964680832639,1.84296421259539,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0.269605053441981,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,1.4793148277115,0,4.72775363535873,0,0,0,0,0.120596438625408,0,0,0,0,0,3.20674611840788,0.0769502585037971,0,0.23056390438806,0,0.217294743844016,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0.332423363800313,0,0,0,0,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36965233252463,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.783939179315021,0.261177619741208,0,0,0.580537987734511,0.65780385377567,0.903270027585302,2.71569246167574,0,0.225980740780532,0,0,0,1.95551382734803,0,0,0.39961921916426,0,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.998395002494955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0.670869375198532,0,0,0,0,0.959575986597226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0.124980407962107,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0.926404341482917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687034029507179,0.235939446695481,0.550285795565037,0.115525666150338,0,0,0,0,0,0,0,0.163771917510097,0.147856086217045,0,0,0,0,0,0.548257766857182,0,0,1.27762427639595,0,0,0,0,0.177404740325278,0,0,0.203909198930495,0,0,0,0.078493092850514,0,1.12108865325516,0,0,0,0,0,0,0,0,0.62164849248911,1.3657478167516,0.691259661814092,0.430227358820278,0,0,0.423387050190929,0.4582137370881,0,0,0,0.196300467230486,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0.71421575442263,0,0,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0.0645889098360061,0.0620747142958579,0,0,0,0.870866991587845,0.684466602170562,1.6164492723501,0.502055437748735,0.332660356546013,0.244209805832924,0,0,0,2.34640942403454,0.122241444182866,1.22068853494722,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,1.83884244895785,0.30120591877825,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.818238361772504,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0.473227200159376,1.34867752062481,0.482022059766964,0.441175890929576,1.08939722046203,1.42362371466658,1.21348177344148,0.392442930250692,1.15424147083917,0,0,0,0,0,0,0,0,0,0,0.658501712451753,2.24803506515239,0.402115889646523,0.925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503946384596579,0.850650583454319,0.716468181622786,0.290633938513962,0.383382679165211,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460404944679482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576570202095319,0.255225424989168,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0.670302275535787,0,0,2.15252686335615,0,1.7737206141467,0.459446800413919,0,0,0,0,0,0,0,0,0,0,1.96032172784825,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445773537109913,0,0.95497793895076,0.296964680832639,1.84296421259539,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0.269605053441981,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,1.4793148277115,0,4.72775363535873,0,0,0,0,0.120596438625408,0,0,0,0,0,3.20674611840788,0.0769502585037971,0,0.23056390438806,0,0.217294743844016,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0.332423363800313,0,0,0,0,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36965233252463,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.783939179315021,0.261177619741208,0,0,0.580537987734511,0.65780385377567,0.903270027585302,2.71569246167574,0,0.225980740780532,0,0,0,1.95551382734803,0,0,0.39961921916426,0,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.998395002494955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0.670869375198532,0,0,0,0,0.959575986597226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0.124980407962107,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0.926404341482917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687034029507179,0.235939446695481,0.550285795565037,0.115525666150338,0,0,0,0,0,0,0,0.163771917510097,0.147856086217045,0,0,0,0,0,0.548257766857182,0,0,1.27762427639595,0,0,0,0,0.177404740325278,0,0,0.203909198930495,0,0,0,0.078493092850514,0,1.12108865325516,0,0,0,0,0,0,0,0,0.62164849248911,1.3657478167516,0.691259661814092,0.430227358820278,0,0,0.423387050190929,0.4582137370881,0,0,0,0.196300467230486,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0.71421575442263,0,0,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0.0645889098360061,0.0620747142958579,0,0,0,0.870866991587845,0.684466602170562,1.6164492723501,0.502055437748735,0.332660356546013,0.244209805832924,0,0,0,2.34640942403454,0.122241444182866,1.22068853494722,0.665756774185513,0,0 | ||
|short_description=p12@TRIM29 | |short_description=p12@TRIM29 | ||
}} | }} |
Latest revision as of 04:57, 16 September 2015
Short description: | p12@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_TRIM29_5end |
Coexpression cluster: | NA |
Association with transcript: | -84bp_to_NM_012101, uc001pwz.2, uc001pxa.2_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | Q14134 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 1.16e-10 | 3 |
epithelial cell | 1.68e-08 | 253 |
epithelial cell of esophagus | 2.29e-08 | 1 |
transitional epithelial cell | 2.56e-08 | 4 |
urothelial cell | 2.56e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.01e-19 | 9 |
upper respiratory tract | 9.00e-13 | 19 |
segment of respiratory tract | 7.38e-11 | 47 |
respiratory primordium | 7.59e-11 | 38 |
endoderm of foregut | 7.59e-11 | 38 |
esophagus | 1.11e-10 | 3 |
esophageal region | 1.11e-10 | 3 |
lower respiratory tract epithelium | 1.16e-10 | 3 |
epithelium of bronchus | 1.16e-10 | 3 |
foregut | 1.31e-09 | 87 |
endoderm-derived structure | 1.58e-09 | 160 |
endoderm | 1.58e-09 | 160 |
presumptive endoderm | 1.58e-09 | 160 |
respiratory tract | 2.84e-09 | 54 |
subdivision of digestive tract | 5.02e-09 | 118 |
tonsil | 1.27e-08 | 1 |
mucosa-associated lymphoid tissue | 1.27e-08 | 1 |
lymphoid tissue | 1.27e-08 | 1 |
tonsillar ring | 1.27e-08 | 1 |
digestive system | 4.37e-08 | 145 |
digestive tract | 4.37e-08 | 145 |
primitive gut | 4.37e-08 | 145 |
respiratory system | 6.15e-08 | 74 |
urothelium | 8.17e-07 | 5 |
bronchus | 9.98e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.80e-07 | 106 |