FFCP PHASE1:Hg19::chr9:139640458..139640471,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=158062 | |EntrezGene=158062 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17337 | |HGNC=17337 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=2bp_to_ENST00000476567_5end | |association_with_transcript=2bp_to_ENST00000476567_5end | ||
|cluster_id=chr9:139640458..139640471,- | |||
|coexpression_cluster_id=C39 | |||
|description=CAGE_peak_3_at_LCN6_5end | |description=CAGE_peak_3_at_LCN6_5end | ||
|id=chr9:139640458..139640471,- | |id=chr9:139640458..139640471,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010226;2.66e-18;1!UBERON:0000358;8.72e-18;1!UBERON:0001045;1.44e-17;1!UBERON:0007297;8.69e-10;2!UBERON:0006603;9.46e-07;65 | |||
|ontology_enrichment_disease=DOID:114!2.79e-08!2 | |||
|ontology_enrichment_disease_v019=DOID:114;7.10e-34;2!DOID:178;8.72e-18;1!DOID:326;8.72e-18;1!DOID:3978;8.72e-18;1!DOID:3394;8.72e-18;1!DOID:5844;8.72e-18;1!DOID:1287;1.71e-17;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,6.00e-34,2;DOID:178,7.37e-18,1;DOID:326,7.37e-18,1;DOID:3978,7.37e-18,1;DOID:3394,7.37e-18,1;DOID:5844,7.37e-18,1;DOID:1287,1.57e-17,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.88e-60!115;UBERON:0004151!1.68e-11!3;UBERON:0003978!5.31e-11!3;UBERON:0009751!5.31e-11!3;UBERON:0000946!5.31e-11!3;UBERON:0002523!5.31e-11!3;UBERON:0005983!5.31e-11!3;UBERON:0002165!5.31e-11!3;UBERON:0002062!5.31e-11!3;UBERON:0007280!5.31e-11!3;UBERON:0007100!6.88e-09!27;UBERON:0003103!7.61e-09!69;UBERON:0002081!4.07e-08!2;UBERON:0002133!4.51e-08!2;UBERON:0003127!6.56e-08!2;UBERON:0000341!3.29e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;2.10e-23;3!UBERON:0002084;2.66e-18;1!UBERON:0002082;2.66e-18;1!UBERON:0001301;3.16e-18;1!UBERON:0000996;4.44e-18;1!UBERON:0002134;4.44e-18;1!UBERON:0005208;4.44e-18;1!UBERON:0004145;4.44e-18;1!UBERON:0005946;4.44e-18;1!UBERON:0005965;4.44e-18;1!UBERON:0002078;4.44e-18;1!UBERON:0001154;1.44e-17;1!UBERON:0001153;1.44e-17;1!UBERON:0009854;1.44e-17;1!UBERON:0007100;9.54e-17;25!UBERON:0002081;1.03e-09;2!UBERON:0002133;1.03e-09;2!UBERON:0004175;9.73e-08;21!UBERON:0003135;5.81e-07;11!UBERON:0006947;6.14e-07;3!UBERON:0004054;6.14e-07;3!UBERON:0003978;6.88e-07;3!UBERON:0000946;6.88e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,2.10e-23,3;UBERON:0002084,2.66e-18,1;UBERON:0002082,2.66e-18,1;UBERON:0010226,2.66e-18,1;UBERON:0001301,3.16e-18,1;UBERON:0000996,3.75e-18,1;UBERON:0002134,4.44e-18,1;UBERON:0005208,4.44e-18,1;UBERON:0005946,4.44e-18,1;UBERON:0005965,4.44e-18,1;UBERON:0002078,4.44e-18,1;UBERON:0001154,1.70e-17,1;UBERON:0001153,1.70e-17,1;UBERON:0001045,1.70e-17,1;UBERON:0007023,1.00e-16,114;UBERON:0007100,1.63e-15,27;UBERON:0002081,1.03e-09,2;UBERON:0002133,1.03e-09,2;UBERON:0010227,1.03e-09,2;UBERON:0003103,1.15e-08,68;UBERON:0003135,5.64e-07,11;UBERON:0006947,6.14e-07,3;UBERON:0004054,6.14e-07,3;UBERON:0003978,6.88e-07,3;UBERON:0009751,6.88e-07,3;UBERON:0000946,6.88e-07,3;UBERON:0002523,6.88e-07,3;UBERON:0005983,6.88e-07,3;UBERON:0004145,6.88e-07,3;UBERON:0002165,6.88e-07,3;UBERON:0002062,6.88e-07,3;UBERON:0007280,6.88e-07,3 | |||
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| ||
|short_description=p3@LCN6 | |short_description=p3@LCN6 | ||
}} | }} |
Latest revision as of 13:05, 16 September 2015
Short description: | p3@LCN6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LCN6_5end |
Coexpression cluster: | C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133 |
Association with transcript: | 2bp_to_ENST00000476567_5end |
EntrezGene: | LCN6 |
HGNC: | 17337 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 2.10e-23 | 3 |
heart left ventricle | 2.66e-18 | 1 |
cardiac ventricle | 2.66e-18 | 1 |
future cardiac ventricle | 2.66e-18 | 1 |
epididymis | 3.16e-18 | 1 |
vagina | 3.75e-18 | 1 |
tricuspid valve | 4.44e-18 | 1 |
right atrium valve | 4.44e-18 | 1 |
outflow tract of atrium | 4.44e-18 | 1 |
outflow part of right atrium | 4.44e-18 | 1 |
right cardiac atrium | 4.44e-18 | 1 |
vermiform appendix | 1.70e-17 | 1 |
caecum | 1.70e-17 | 1 |
midgut | 1.70e-17 | 1 |
adult organism | 1.00e-16 | 114 |
primary circulatory organ | 1.63e-15 | 27 |
cardiac atrium | 1.03e-09 | 2 |
atrioventricular valve | 1.03e-09 | 2 |
future cardiac atrium | 1.03e-09 | 2 |
compound organ | 1.15e-08 | 68 |
male reproductive organ | 5.64e-07 | 11 |
male genital duct | 6.14e-07 | 3 |
internal male genitalia | 6.14e-07 | 3 |
valve | 6.88e-07 | 3 |
cardiac mesenchyme | 6.88e-07 | 3 |
cardial valve | 6.88e-07 | 3 |
tunica intima | 6.88e-07 | 3 |
heart layer | 6.88e-07 | 3 |
outflow tract | 6.88e-07 | 3 |
endocardium | 6.88e-07 | 3 |
endocardial cushion | 6.88e-07 | 3 |
presumptive endocardium | 6.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
heart disease | 6.00e-34 | 2 |
vascular disease | 7.37e-18 | 1 |
ischemia | 7.37e-18 | 1 |
extrinsic cardiomyopathy | 7.37e-18 | 1 |
myocardial ischemia | 7.37e-18 | 1 |
myocardial infarction | 7.37e-18 | 1 |
cardiovascular system disease | 1.57e-17 | 4 |