FFCP PHASE1:Hg19::chr9:139640458..139640471,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=158062 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17337 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=2bp_to_ENST00000476567_5end | |||
|cluster_id=chr9:139640458..139640471,- | |||
|coexpression_cluster_id=C39 | |||
|description=CAGE_peak_3_at_LCN6_5end | |||
|id=chr9:139640458..139640471,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010226;2.66e-18;1!UBERON:0000358;8.72e-18;1!UBERON:0001045;1.44e-17;1!UBERON:0007297;8.69e-10;2!UBERON:0006603;9.46e-07;65 | |||
|ontology_enrichment_disease=DOID:114!2.79e-08!2 | |||
|ontology_enrichment_disease_v019=DOID:114;7.10e-34;2!DOID:178;8.72e-18;1!DOID:326;8.72e-18;1!DOID:3978;8.72e-18;1!DOID:3394;8.72e-18;1!DOID:5844;8.72e-18;1!DOID:1287;1.71e-17;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,6.00e-34,2;DOID:178,7.37e-18,1;DOID:326,7.37e-18,1;DOID:3978,7.37e-18,1;DOID:3394,7.37e-18,1;DOID:5844,7.37e-18,1;DOID:1287,1.57e-17,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.88e-60!115;UBERON:0004151!1.68e-11!3;UBERON:0003978!5.31e-11!3;UBERON:0009751!5.31e-11!3;UBERON:0000946!5.31e-11!3;UBERON:0002523!5.31e-11!3;UBERON:0005983!5.31e-11!3;UBERON:0002165!5.31e-11!3;UBERON:0002062!5.31e-11!3;UBERON:0007280!5.31e-11!3;UBERON:0007100!6.88e-09!27;UBERON:0003103!7.61e-09!69;UBERON:0002081!4.07e-08!2;UBERON:0002133!4.51e-08!2;UBERON:0003127!6.56e-08!2;UBERON:0000341!3.29e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;2.10e-23;3!UBERON:0002084;2.66e-18;1!UBERON:0002082;2.66e-18;1!UBERON:0001301;3.16e-18;1!UBERON:0000996;4.44e-18;1!UBERON:0002134;4.44e-18;1!UBERON:0005208;4.44e-18;1!UBERON:0004145;4.44e-18;1!UBERON:0005946;4.44e-18;1!UBERON:0005965;4.44e-18;1!UBERON:0002078;4.44e-18;1!UBERON:0001154;1.44e-17;1!UBERON:0001153;1.44e-17;1!UBERON:0009854;1.44e-17;1!UBERON:0007100;9.54e-17;25!UBERON:0002081;1.03e-09;2!UBERON:0002133;1.03e-09;2!UBERON:0004175;9.73e-08;21!UBERON:0003135;5.81e-07;11!UBERON:0006947;6.14e-07;3!UBERON:0004054;6.14e-07;3!UBERON:0003978;6.88e-07;3!UBERON:0000946;6.88e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,2.10e-23,3;UBERON:0002084,2.66e-18,1;UBERON:0002082,2.66e-18,1;UBERON:0010226,2.66e-18,1;UBERON:0001301,3.16e-18,1;UBERON:0000996,3.75e-18,1;UBERON:0002134,4.44e-18,1;UBERON:0005208,4.44e-18,1;UBERON:0005946,4.44e-18,1;UBERON:0005965,4.44e-18,1;UBERON:0002078,4.44e-18,1;UBERON:0001154,1.70e-17,1;UBERON:0001153,1.70e-17,1;UBERON:0001045,1.70e-17,1;UBERON:0007023,1.00e-16,114;UBERON:0007100,1.63e-15,27;UBERON:0002081,1.03e-09,2;UBERON:0002133,1.03e-09,2;UBERON:0010227,1.03e-09,2;UBERON:0003103,1.15e-08,68;UBERON:0003135,5.64e-07,11;UBERON:0006947,6.14e-07,3;UBERON:0004054,6.14e-07,3;UBERON:0003978,6.88e-07,3;UBERON:0009751,6.88e-07,3;UBERON:0000946,6.88e-07,3;UBERON:0002523,6.88e-07,3;UBERON:0005983,6.88e-07,3;UBERON:0004145,6.88e-07,3;UBERON:0002165,6.88e-07,3;UBERON:0002062,6.88e-07,3;UBERON:0007280,6.88e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,1.10513566212459,0,0,0,0,0,0,0,0.493217028184668,0,0,0,0,0,0,0,2.17499872630438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15425387755696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,5.76598005198699,0,0,0,0,0.969890164884194,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.558564802544508,0.458320848023367,4.30723814746088,2.79550600698588,3.43380838509257,4.01708623395371,0.604651252380536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551639951094387,0,0,0,0,0.714695326373367,7.28301167401975,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0.747511887973863,0,0,0.496166021811951,0,0,0,0.544017803369474,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410651227424988,0,0.485710993059139,0,0,0,0,0,0,0.308696632431779,0,0,0.490296643507811,0,0.392616934229891,0,0,0,0.187967835959707,0.128915775947154,0,0,0,0,0.730336388246517,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36401656792831,0.535928260312357,0,0,0.213233981900981,0.23806443146374,0,0.124149428591716,0,0.318235791390825,0,0.217716747896961,0,0.134704106029175,0.78894425931944,0.665320713092027,0,0,0,0,2.34640942403454,0.366724332548599,0,4.66029741929859,0.805095174364105,0 | |||
|short_description=p3@LCN6 | |||
}} |
Latest revision as of 13:05, 16 September 2015
Short description: | p3@LCN6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LCN6_5end |
Coexpression cluster: | C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133 |
Association with transcript: | 2bp_to_ENST00000476567_5end |
EntrezGene: | LCN6 |
HGNC: | 17337 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 2.10e-23 | 3 |
heart left ventricle | 2.66e-18 | 1 |
cardiac ventricle | 2.66e-18 | 1 |
future cardiac ventricle | 2.66e-18 | 1 |
epididymis | 3.16e-18 | 1 |
vagina | 3.75e-18 | 1 |
tricuspid valve | 4.44e-18 | 1 |
right atrium valve | 4.44e-18 | 1 |
outflow tract of atrium | 4.44e-18 | 1 |
outflow part of right atrium | 4.44e-18 | 1 |
right cardiac atrium | 4.44e-18 | 1 |
vermiform appendix | 1.70e-17 | 1 |
caecum | 1.70e-17 | 1 |
midgut | 1.70e-17 | 1 |
adult organism | 1.00e-16 | 114 |
primary circulatory organ | 1.63e-15 | 27 |
cardiac atrium | 1.03e-09 | 2 |
atrioventricular valve | 1.03e-09 | 2 |
future cardiac atrium | 1.03e-09 | 2 |
compound organ | 1.15e-08 | 68 |
male reproductive organ | 5.64e-07 | 11 |
male genital duct | 6.14e-07 | 3 |
internal male genitalia | 6.14e-07 | 3 |
valve | 6.88e-07 | 3 |
cardiac mesenchyme | 6.88e-07 | 3 |
cardial valve | 6.88e-07 | 3 |
tunica intima | 6.88e-07 | 3 |
heart layer | 6.88e-07 | 3 |
outflow tract | 6.88e-07 | 3 |
endocardium | 6.88e-07 | 3 |
endocardial cushion | 6.88e-07 | 3 |
presumptive endocardium | 6.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
heart disease | 6.00e-34 | 2 |
vascular disease | 7.37e-18 | 1 |
ischemia | 7.37e-18 | 1 |
extrinsic cardiomyopathy | 7.37e-18 | 1 |
myocardial ischemia | 7.37e-18 | 1 |
myocardial infarction | 7.37e-18 | 1 |
cardiovascular system disease | 1.57e-17 | 4 |