FFCP PHASE1:Hg19::chr19:18366182..18366210,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=729966,5143 | |EntrezGene=729966,5143 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8782 | |HGNC=8782 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=18bp_to_NR_036575,uc002nil.3_5end | |association_with_transcript=18bp_to_NR_036575,uc002nil.3_5end | ||
|cluster_id=chr19:18366182..18366210,- | |||
|coexpression_cluster_id=C3544 | |coexpression_cluster_id=C3544 | ||
|description=CAGE_peak_3_at_PDE4C_5end | |description=CAGE_peak_3_at_PDE4C_5end | ||
|id=chr19:18366182..18366210,- | |id=chr19:18366182..18366210,- | ||
|ontology_enrichment_celltype=CL:0002076!1.62e-09!43;CL:0000223!5.71e-08!59 | |ontology_enrichment_celltype=CL:0002076!1.62e-09!43;CL:0000223!5.71e-08!59 | ||
|ontology_enrichment_celltype_v019=CL:0002537;3.55e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,2.76e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0006242;1.83e-09;1!UBERON:0001045;3.67e-09;1 | |||
|ontology_enrichment_disease=DOID:299!3.87e-08!25 | |ontology_enrichment_disease=DOID:299!3.87e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:299;4.09e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:299,4.12e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.10e-16!169;UBERON:0000925!1.10e-16!169;UBERON:0006595!1.10e-16!169;UBERON:0001007!4.01e-14!155;UBERON:0001555!4.01e-14!155;UBERON:0007026!4.01e-14!155;UBERON:0004921!1.58e-13!129;UBERON:0004185!1.58e-13!129;UBERON:0005409!6.62e-11!35;UBERON:0000077!1.62e-09!130;UBERON:0000160!5.52e-09!27;UBERON:0000464!1.46e-08!104;UBERON:0001004!8.27e-07!72 | |ontology_enrichment_uberon=UBERON:0004119!1.10e-16!169;UBERON:0000925!1.10e-16!169;UBERON:0006595!1.10e-16!169;UBERON:0001007!4.01e-14!155;UBERON:0001555!4.01e-14!155;UBERON:0007026!4.01e-14!155;UBERON:0004921!1.58e-13!129;UBERON:0004185!1.58e-13!129;UBERON:0005409!6.62e-11!35;UBERON:0000077!1.62e-09!130;UBERON:0000160!5.52e-09!27;UBERON:0000464!1.46e-08!104;UBERON:0001004!8.27e-07!72 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.54e-33;22!UBERON:0000160;1.35e-27;17!UBERON:0004921;7.04e-20;33!UBERON:0000059;1.86e-18;11!UBERON:0002108;7.32e-15;4!UBERON:0001155;1.06e-14;9!UBERON:0001154;3.67e-09;1!UBERON:0001153;3.67e-09;1!UBERON:0009854;3.67e-09;1!UBERON:0001555;4.41e-08;54!UBERON:0000945;1.58e-07;5!UBERON:0010039;1.58e-07;5!UBERON:0004907;2.21e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,2.05e-29,25;UBERON:0000160,1.70e-27,17;UBERON:0000059,2.08e-18,11;UBERON:0002108,8.66e-15,4;UBERON:0001155,1.16e-14,9;UBERON:0004921,3.94e-09,118;UBERON:0001154,4.87e-09,1;UBERON:0001153,4.87e-09,1;UBERON:0001045,4.87e-09,1;UBERON:0001007,2.69e-08,145;UBERON:0001555,2.69e-08,145;UBERON:0007026,2.69e-08,145;UBERON:0004907,2.51e-07,5;UBERON:0004119,2.73e-07,160;UBERON:0000925,2.73e-07,160;UBERON:0006595,2.73e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74953878978203,0,0,0,0.451199612907412,0.15403067420883,0,0,0,0,0,0,0,0,0,1.01950509218015,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0.670302275535787,0,0.0941438007767792,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1641351265343,0,0,0,0,1.43246690842614,0,1.53580351049616,0,0,0,0,0,0.597743964753209,1.10513566212459,0,0,0,0,0.449341755736634,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628303510868405,0.977826347298073,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,2.12202650606892,0,0,11.9431431729421,2.74218449960351,10.3875124638716,0,0,0,0,0,0,0,1.17398771359254,0,0,6.04953580243319,0,0,0,0,0,0,0,0,0.284609546029793,0,0.347119476670262,0,0,0,0,0,0,0,0.484945082442097,0,0.90392296312213,0,0,0,0.586654148204409,0,4.0556069000477,0,7.92497294347583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0,0.415440338029185,0,0,0,0,0.236417121897595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75296524548339,0.427149650270779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845248493434508,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0.261906694481422,0,0,0,0,0,0,0,0.548257766857182,0,0,0.127762427639595,0,0,0,0,0.354809480650555,0.115233987555779,0,0,0,0,0.222462803784138,0,0,0,10.0447459256045,0,0,0,0,0,0,0,0,0.17071847709395,0,0.430227358820278,0,0,0,0.22910686854405,0,0,0,0.490751168076215,21.4575547968794,0,0,0,0,0.467878926924211,0,0,0,0,0.301925687133347,1.23478652972711,1.09279780251979,0,0,0.235676547101626,0,0,0,0,0,0,0,0,0,0,8.76403665895821,0,0,0,0,0,6.34832208618481,0,0,0,0,0,0,0,0,0,0.250707539292375,0,0,0,0,1.27940389140589,0,0,0,0,0.190941474834495,0,0,0.342233301085281,0.606168477131288,0.860666464712116,1.33064142618405,0,0,0,0,0,0.122241444182866,0.406896178315738,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74953878978203,0,0,0,0.451199612907412,0.15403067420883,0,0,0,0,0,0,0,0,0,1.01950509218015,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0.670302275535787,0,0.0941438007767792,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1641351265343,0,0,0,0,1.43246690842614,0,1.53580351049616,0,0,0,0,0,0.597743964753209,1.10513566212459,0,0,0,0,0.449341755736634,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628303510868405,0.977826347298073,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,2.12202650606892,0,0,11.9431431729421,2.74218449960351,10.3875124638716,0,0,0,0,0,0,0,1.17398771359254,0,0,6.04953580243319,0,0,0,0,0,0,0,0,0.284609546029793,0,0.347119476670262,0,0,0,0,0,0,0,0.484945082442097,0,0.90392296312213,0,0,0,0.586654148204409,0,4.0556069000477,0,7.92497294347583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0,0.415440338029185,0,0,0,0,0.236417121897595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75296524548339,0.427149650270779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845248493434508,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0.261906694481422,0,0,0,0,0,0,0,0.548257766857182,0,0,0.127762427639595,0,0,0,0,0.354809480650555,0.115233987555779,0,0,0,0,0.222462803784138,0,0,0,10.0447459256045,0,0,0,0,0,0,0,0,0.17071847709395,0,0.430227358820278,0,0,0,0.22910686854405,0,0,0,0.490751168076215,21.4575547968794,0,0,0,0,0.467878926924211,0,0,0,0,0.301925687133347,1.23478652972711,1.09279780251979,0,0,0.235676547101626,0,0,0,0,0,0,0,0,0,0,8.76403665895821,0,0,0,0,0,6.34832208618481,0,0,0,0,0,0,0,0,0,0.250707539292375,0,0,0,0,1.27940389140589,0,0,0,0,0.190941474834495,0,0,0.342233301085281,0.606168477131288,0.860666464712116,1.33064142618405,0,0,0,0,0,0.122241444182866,0.406896178315738,0.665756774185513,0,0 | ||
|short_description=p3@PDE4C | |short_description=p3@PDE4C | ||
}} | }} |
Latest revision as of 14:51, 16 September 2015
Short description: | p3@PDE4C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PDE4C_5end |
Coexpression cluster: | C3544_colon_signet_gastric_gall_stomach_adenocarcinoma_bile |
Association with transcript: | 18bp_to_NR_036575, uc002nil.3_5end |
EntrezGene: | 729966,5143 |
HGNC: | 8782 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 2.76e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 2.05e-29 | 25 |
intestine | 1.70e-27 | 17 |
large intestine | 2.08e-18 | 11 |
small intestine | 8.66e-15 | 4 |
colon | 1.16e-14 | 9 |
subdivision of digestive tract | 3.94e-09 | 118 |
vermiform appendix | 4.87e-09 | 1 |
caecum | 4.87e-09 | 1 |
midgut | 4.87e-09 | 1 |
digestive system | 2.69e-08 | 145 |
digestive tract | 2.69e-08 | 145 |
primitive gut | 2.69e-08 | 145 |
lower digestive tract | 2.51e-07 | 5 |
endoderm-derived structure | 2.73e-07 | 160 |
endoderm | 2.73e-07 | 160 |
presumptive endoderm | 2.73e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 4.12e-08 | 25 |