FFCP PHASE1:Hg19::chr6:166581333..166581349,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6862 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11515 | |||
|TSSclassifier=strong | |||
|UniProt=O15178 | |||
|association_with_transcript=15bp_to_ENST00000366876,uc003qut.1_5end | |||
|cluster_id=chr6:166581333..166581349,- | |||
|coexpression_cluster_id=C137 | |||
|description=CAGE_peak_2_at_T_5end | |||
|id=chr6:166581333..166581349,- | |||
|ontology_enrichment_celltype=CL:0002322!8.44e-44!5;CL:0000242!7.68e-19!2;CL:0000946!1.80e-10!1;CL:0000786!1.80e-10!1;CL:0000980!1.80e-10!1;CL:0000167!4.44e-10!1;CL:0000164!4.44e-10!1;CL:0000502!4.44e-10!1;CL:0000172!4.44e-10!1;CL:0000173!4.44e-10!1;CL:0002351!4.44e-10!1;CL:0000148!1.64e-08!10;CL:0000541!1.64e-08!10;CL:0000312!4.45e-08!5;CL:0000240!7.26e-07!6;CL:0000311!7.26e-07!6;CL:0000079!7.26e-07!6;CL:0000237!7.26e-07!6;CL:0000036!7.26e-07!6;CL:0000357!7.26e-07!6;CL:0000114!7.26e-07!6;CL:0000540!7.92e-07!6;CL:0000031!7.92e-07!6;CL:0000404!7.92e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000123;2.39e-44;2!CL:0000242;2.39e-44;2!CL:0002322;9.69e-40;5!CL:0000946;1.34e-23;1!CL:0000786;1.34e-23;1!CL:0000312;1.93e-18;5!CL:0000240;1.52e-15;6!CL:0000311;1.52e-15;6!CL:0000079;1.52e-15;6!CL:0000237;1.52e-15;6!CL:0002321;8.76e-14;15!CL:0000362;1.07e-10;9!CL:0002077;9.12e-10;34!CL:0000148;1.05e-09;10!CL:0002319;5.50e-08;25!CL:0002159;3.34e-07;14!CL:0000147;3.44e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.91e-44,2;CL:0002322,1.11e-39,5;CL:0000946,1.34e-23,1;CL:0000786,1.34e-23,1;CL:0000980,1.34e-23,1;CL:0000312,1.77e-18,5;CL:0000240,1.41e-15,6;CL:0000311,1.41e-15,6;CL:0000079,1.41e-15,6;CL:0000237,1.41e-15,6;CL:0000036,1.41e-15,6;CL:0000357,1.41e-15,6;CL:0000114,1.41e-15,6;CL:0000785,1.65e-12,2;CL:0000955,1.65e-12,2;CL:0000818,1.65e-12,2;CL:0000954,1.65e-12,2;CL:0000816,1.65e-12,2;CL:0000362,1.02e-10,9;CL:0002077,1.11e-10,34;CL:0000148,1.10e-09,10;CL:0000541,1.10e-09,10;CL:0000133,3.68e-09,59;CL:0000817,8.96e-09,3;CL:0000333,1.60e-08,41;CL:0002319,5.37e-08,25;CL:0000221,1.43e-07,72;CL:0002159,3.24e-07,14;CL:0000147,3.55e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000357;1.52e-15;6!CL:0000114;1.52e-15;6!CL:0000954;1.65e-12;2 | |||
|ontology_enrichment_disease=DOID:630!2.16e-10!1;DOID:0050177!2.16e-10!1;DOID:0050427!2.16e-10!1;DOID:4430!4.44e-10!1;DOID:0050619!8.99e-10!1;DOID:1357!8.99e-10!1 | |||
|ontology_enrichment_disease_v019=DOID:630;2.10e-23;1!DOID:0050177;2.10e-23;1!DOID:0050427;2.10e-23;1!DOID:4556;8.31e-09;3 | |||
|ontology_enrichment_disease_v019_2=DOID:630,2.10e-23,1;DOID:0050177,2.10e-23,1;DOID:0050427,2.10e-23,1;DOID:4556,8.31e-09,3 | |||
|ontology_enrichment_uberon=UBERON:0000007!2.22e-18!2;UBERON:0001764!8.99e-10!1;UBERON:0001825!8.99e-10!1;UBERON:0002022!1.17e-09!1;UBERON:0003296!1.17e-09!4;UBERON:0010133!1.17e-09!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;8.83e-07;15!UBERON:0007376;8.83e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,8.58e-07,15;UBERON:0007376,8.58e-07,15;UBERON:0007383,8.58e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,3.18071443971565,3.02104251460748,1.24393266018445,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0.207376382794494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.3425113225966,0.412618309791701,0,0,0,0.0607495566580247,0,0,0,0,131.417619730975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,3.27834434064817,2.8984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0.227662191351298,0,46.2088290098675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471353094203252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.09080135376143 | |||
|short_description=p2@T | |||
}} |
Latest revision as of 19:59, 16 September 2015
Short description: | p2@T |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_T_5end |
Coexpression cluster: | C137_large_ductal_melanoma_cervical_Endothelial_Smooth_chronic |
Association with transcript: | 15bp_to_ENST00000366876, uc003qut.1_5end |
EntrezGene: | T |
HGNC: | 11515 |
UniProt: | O15178 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.91e-44 | 2 |
embryonic stem cell | 1.11e-39 | 5 |
antibody secreting cell | 1.34e-23 | 1 |
plasma cell | 1.34e-23 | 1 |
plasmablast | 1.34e-23 | 1 |
keratinocyte | 1.77e-18 | 5 |
stratified squamous epithelial cell | 1.41e-15 | 6 |
keratin accumulating cell | 1.41e-15 | 6 |
stratified epithelial cell | 1.41e-15 | 6 |
keratinizing barrier epithelial cell | 1.41e-15 | 6 |
epithelial fate stem cell | 1.41e-15 | 6 |
stratified epithelial stem cell | 1.41e-15 | 6 |
surface ectodermal cell | 1.41e-15 | 6 |
mature B cell | 1.65e-12 | 2 |
pre-B-II cell | 1.65e-12 | 2 |
transitional stage B cell | 1.65e-12 | 2 |
small pre-B-II cell | 1.65e-12 | 2 |
immature B cell | 1.65e-12 | 2 |
epidermal cell | 1.02e-10 | 9 |
ecto-epithelial cell | 1.11e-10 | 34 |
melanocyte | 1.10e-09 | 10 |
melanoblast | 1.10e-09 | 10 |
neurectodermal cell | 3.68e-09 | 59 |
precursor B cell | 8.96e-09 | 3 |
migratory neural crest cell | 1.60e-08 | 41 |
neural cell | 5.37e-08 | 25 |
ectodermal cell | 1.43e-07 | 72 |
general ecto-epithelial cell | 3.24e-07 | 14 |
pigment cell | 3.55e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 8.58e-07 | 15 |
outer epithelium | 8.58e-07 | 15 |
enveloping layer of ectoderm | 8.58e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 2.10e-23 | 1 |
monogenic disease | 2.10e-23 | 1 |
xeroderma pigmentosum | 2.10e-23 | 1 |
lung large cell carcinoma | 8.31e-09 | 3 |