FFCP PHASE1:Hg19::chr2:29033682..29033750,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=245711 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30613 | |||
|TSSclassifier=strong | |||
|UniProt=Q5MJ70 | |||
|association_with_transcript=0bp_to_ENST00000334056,ENST00000379579,ENST00000491044,NM_001142634,NM_182756,uc002rmj.2,uc002rmk.2_5end | |||
|cluster_id=chr2:29033682..29033750,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_SPDYA_5end | |||
|id=chr2:29033682..29033750,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002535;6.47e-17;2!CL:0002605;4.89e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,6.23e-17,2;CL:0002605,4.42e-11,3;CL:0000082,9.66e-07,19;CL:0000077,9.81e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3905;5.83e-14;9!DOID:1325;2.08e-10;7!DOID:3904;2.08e-10;7!DOID:225;6.72e-09;1!DOID:5409;1.23e-08;4!DOID:1324;1.94e-08;15!DOID:0050615;6.41e-08;16!DOID:4362;2.74e-07;5!DOID:3908;3.91e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3905,4.38e-14,9;DOID:1325,1.58e-10,7;DOID:3904,1.58e-10,7;DOID:225,6.72e-09,1;DOID:5409,1.16e-08,4;DOID:1324,1.64e-08,15;DOID:0050615,5.49e-08,16;DOID:4362,2.70e-07,5;DOID:3908,3.16e-07,5;DOID:305,5.51e-07,106;DOID:0050687,8.40e-07,143 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;6.47e-17;2!UBERON:0004801;6.47e-17;2!UBERON:0002369;2.85e-11;3!UBERON:0001235;2.85e-11;3!UBERON:0006858;2.85e-11;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,6.23e-17,2;UBERON:0004801,6.23e-17,2;UBERON:0002369,3.42e-11,3;UBERON:0001235,3.42e-11,3;UBERON:0006858,3.42e-11,3;UBERON:0004802,9.66e-07,19;UBERON:0000115,9.66e-07,19 | |||
|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0.246242116153576,0,0,1.43117993565528,1.23186982565596,0.376627918784408,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0.587200878669695,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0.196709770113833,0,0.616804496998528,0.167186495390678,0,0,0,0.111410456885174,0.294605907474837,0.221533894583621,0.270803863765016,0.128091319725675,0,0.657751618414705,0.552700035571697,0.579606171470105,0.14828656316206,0,0,0.679856056185397,0,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0.534880391567015,0.289648807765598,0,0,0.12786256184353,0,0,0,0,0,0.189069634328136,0,0.263504357079378,32.4828107234327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0.23486899728753,0,0.561803226808994,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.600182192168805,0,0,0,0.168776332241266,0.0974370051611986,0.252433774244115,0,0.323292113637624,0,0.201504196455281,0.339121184620975,0,0,0,0.121973706129595,0.397589304964456,0.580969714347592,0.310983165046111,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0.743155811443641,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0.75745460055828,0.317489471460845,0,1.17217447210047,0,0.102827492703324,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0,0,1.08524321078289,0,0,0,0.791951872933429,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0.179060963239896,0,0,0.862510299438069,0.77005821767849,0.508189248444927,0,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0.362578348774867,0,0,0.114814448164607,0,0,0.451199612907412,0.15403067420883,0,0,0.105551628892876,1.13733384070897,0,0,0,0,0,0.254876273045038,0,0,0.438519753291869,0,0,0.328014645699706,0,0.103041011647722,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0.411362273086194,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447352215784832,0.500547425135725,0,0,0,0,0,0,0,0,3.03401304373784,0,0,0.23874448473769,0.890894042497916,0,0,0.140669416410513,0,0,0.844501632511974,0,0,3.27512572210559,0,0,0,0,0.358042349351218,0.511572370226872,0.197286811273867,0,0,0,0,0,0,0,0,0,1.77977555204936,0.236387681767936,0.344743373241465,0.291604613383254,0,0,0.241192877250816,0,0,0,0.219385397153973,0,0,0,0.113942055847001,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0.317873157960757,0,0,0.424059214301822,0,0,0.0884575645033392,0.611030144933625,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0.91821828489147,0.063186579628488,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0,7.40003255933422,0.698906672968121,0,0,0,0,0.0969890164884194,0,0,0,0,0,2.34661659281764,0,0.213452994739353,0,0,0,0.857974989309823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0.160753148465019,0.275078873194468,0.415440338029185,0,0,0.0607495566580247,0,0.0788057072991982,0,0,0,6.14128631422225,0,0,0,0,0,0,0,0.656740165994712,0,0,0,0,0,0.13223260174269,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0.110929051536852,0,0.691743174681154,0,0,0,0,0,0.724605143054126,0.149254802886874,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15571898244382,0.214441591374926,0,0.453411851024545,0.463044948647668,0.244736704506468,0.179088841081487,1.54400723580486,0,0.530067437837643,0,4.22356101632682,0,0.690860683462397,11.8505382909179,0,0,0,0,0,0,0,0.19998739585493,1.28030075632969,0,0,0,0,0,0,0.107824811396682,0,0,0,1.06287460050841,0.247871528518004,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327543835020193,0.591424344868181,0,0,0,0.0634158101939068,0.546974809018219,0,0,0.175871244359621,0,0,0,0.606965604236632,0.227662191351298,0,0,0,0.0679697329768317,0.263091094251396,0.118193840883968,0,0,0.628462359664008,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,1.3746412112643,0,0,0,0,0,0,0,0,0.485710993059139,0,0,2.97300226943921,0,0.109940516745429,1.35866559210006,0.0771741581079447,0.218559560503957,0.470317296361523,0.245148321753905,0,0.196308467114945,0,0.4226557275834,0,0,0.193373663920732,0,0,0,0,0,0,0,0.631086248772738,0.203974470572744,0.436350690340377,0,0,0,0,0,0.218531143927391,0,0.101988829741982,0.534434810531121,0.275684698604535,0.752122617877125,78.809846146969,144.164702024024,0,0,0.213233981900981,0.23806443146374,0.452122368852043,0.31037357147929,0,0.0636471582781649,0.202117188958219,0,0,0.0673520530145875,0.0717222053926763,0,0,1.70763753404345,0,0,0,0,0.813792356631477,0,0.201273793591026,0 | |||
|short_description=p1@SPDYA | |||
}} |
Latest revision as of 20:05, 16 September 2015
Short description: | p1@SPDYA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPDYA_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000334056, ENST00000379579, ENST00000491044, NM_001142634, NM_182756, uc002rmj.2, uc002rmk.2_5end |
EntrezGene: | SPDYA |
HGNC: | 30613 |
UniProt: | Q5MJ70 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 6.23e-17 | 2 |
astrocyte of the cerebral cortex | 4.42e-11 | 3 |
epithelial cell of lung | 9.66e-07 | 19 |
mesothelial cell | 9.81e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 6.23e-17 | 2 |
cervix epithelium | 6.23e-17 | 2 |
adrenal gland | 3.42e-11 | 3 |
adrenal cortex | 3.42e-11 | 3 |
adrenal/interrenal gland | 3.42e-11 | 3 |
respiratory tract epithelium | 9.66e-07 | 19 |
lung epithelium | 9.66e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
lung carcinoma | 4.38e-14 | 9 |
bronchus cancer | 1.58e-10 | 7 |
bronchogenic carcinoma | 1.58e-10 | 7 |
syndrome | 6.72e-09 | 1 |
lung small cell carcinoma | 1.16e-08 | 4 |
lung cancer | 1.64e-08 | 15 |
respiratory system cancer | 5.49e-08 | 16 |
cervical cancer | 2.70e-07 | 5 |
non-small cell lung carcinoma | 3.16e-07 | 5 |
carcinoma | 5.51e-07 | 106 |
cell type cancer | 8.40e-07 | 143 |