FFCP PHASE1:Hg19::chr13:23755127..23755166,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6445 | |EntrezGene=6445 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10809 | |HGNC=10809 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000545013_5end | |association_with_transcript=0bp_to_ENST00000545013_5end | ||
|cluster_id=chr13:23755127..23755166,+ | |||
|coexpression_cluster_id=C31 | |||
|description=CAGE_peak_1_at_SGCG_5end | |description=CAGE_peak_1_at_SGCG_5end | ||
|id=chr13:23755127..23755166,+ | |id=chr13:23755127..23755166,+ | ||
|ontology_enrichment_celltype=CL:0000136!3.26e-32!15;CL:0000325!8.21e-10!39;CL:0002334!7.81e-08!12;CL:0002615!1.03e-07!3;CL:0000188!1.10e-07!9;CL:0002579!2.83e-07!3;CL:0002521!3.75e-07!3 | |ontology_enrichment_celltype=CL:0000136!3.26e-32!15;CL:0000325!8.21e-10!39;CL:0002334!7.81e-08!12;CL:0002615!1.03e-07!3;CL:0000188!1.10e-07!9;CL:0002579!2.83e-07!3;CL:0002521!3.75e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000136;3.77e-42;13!CL:0002615;1.87e-12;3!CL:0002617;9.76e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,4.14e-49,15;CL:0002615,1.91e-12,3;CL:0002617,9.57e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0005062;1.59e-09;4!UBERON:0007284;1.59e-09;4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:114;3.17e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,3.23e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0003688!2.53e-13!6;UBERON:0002358!2.53e-13!6;UBERON:0003684!2.53e-13!6;UBERON:0001178!2.53e-13!6;UBERON:0001443!1.67e-11!11;UBERON:0000310!1.39e-09!10;UBERON:0001013!3.76e-09!14;UBERON:0007023!1.66e-08!115;UBERON:0004151!5.82e-08!3;UBERON:0003978!9.38e-08!3;UBERON:0009751!9.38e-08!3;UBERON:0000946!9.38e-08!3;UBERON:0002523!9.38e-08!3;UBERON:0005983!9.38e-08!3;UBERON:0002165!9.38e-08!3;UBERON:0002062!9.38e-08!3;UBERON:0007280!9.38e-08!3;UBERON:0002190!3.75e-07!3 | |ontology_enrichment_uberon=UBERON:0003688!2.53e-13!6;UBERON:0002358!2.53e-13!6;UBERON:0003684!2.53e-13!6;UBERON:0001178!2.53e-13!6;UBERON:0001443!1.67e-11!11;UBERON:0000310!1.39e-09!10;UBERON:0001013!3.76e-09!14;UBERON:0007023!1.66e-08!115;UBERON:0004151!5.82e-08!3;UBERON:0003978!9.38e-08!3;UBERON:0009751!9.38e-08!3;UBERON:0000946!9.38e-08!3;UBERON:0002523!9.38e-08!3;UBERON:0005983!9.38e-08!3;UBERON:0002165!9.38e-08!3;UBERON:0002062!9.38e-08!3;UBERON:0007280!9.38e-08!3;UBERON:0002190!3.75e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;5.74e-16;6!UBERON:0002358;5.74e-16;6!UBERON:0003684;5.74e-16;6!UBERON:0001178;5.74e-16;6!UBERON:0004151;6.61e-13;3!UBERON:0001013;1.17e-12;14!UBERON:0003978;1.50e-12;3!UBERON:0000946;1.50e-12;3!UBERON:0007100;1.05e-11;25!UBERON:0004457;1.45e-10;9!UBERON:0000042;1.45e-10;9!UBERON:0000341;2.01e-09;2!UBERON:0005090;2.28e-09;2!UBERON:0001630;2.28e-09;2!UBERON:0002081;4.56e-09;2!UBERON:0005406;6.96e-09;2!UBERON:0002133;8.66e-09;2!UBERON:0003127;9.02e-09;2!UBERON:0001134;1.17e-08;16!UBERON:0002036;1.17e-08;16!UBERON:0001723;8.02e-07;3!UBERON:0001033;8.02e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,5.65e-16,6;UBERON:0002358,5.65e-16,6;UBERON:0003684,5.65e-16,6;UBERON:0001178,5.65e-16,6;UBERON:0004151,7.03e-13,3;UBERON:0001013,1.21e-12,14;UBERON:0003978,1.63e-12,3;UBERON:0009751,1.63e-12,3;UBERON:0000946,1.63e-12,3;UBERON:0002523,1.63e-12,3;UBERON:0005983,1.63e-12,3;UBERON:0002165,1.63e-12,3;UBERON:0002062,1.63e-12,3;UBERON:0007280,1.63e-12,3;UBERON:0007100,1.05e-10,27;UBERON:0007023,2.39e-10,114;UBERON:0000341,2.06e-09,2;UBERON:0005090,2.33e-09,2;UBERON:0001630,2.33e-09,2;UBERON:0002081,5.05e-09,2;UBERON:0010227,5.05e-09,2;UBERON:0005406,6.43e-09,2;UBERON:0002133,9.20e-09,2;UBERON:0003127,9.95e-09,2;UBERON:0003103,1.41e-08,68;UBERON:0004457,7.41e-08,12;UBERON:0000042,7.41e-08,12;UBERON:0001723,8.13e-07,3;UBERON:0001033,8.13e-07,3;UBERON:0010056,8.13e-07,3 | |||
|phase1_expression=2.54349730978779,6.63711624062048,3.94672331468719,4.00293193412522,8.04529969969118,5.23403114460221,2.53299878168311,1.26343974685366,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0.919463387397059,0,0,0,0.427114777637135,0,0,0,0,0.37223371266318,0.168776332241266,0.68205903612839,0,0.0920498986422993,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15825045334063,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992431231275107,0.153461973288062,0.280660094433074,1.28139149255701,3.58195074346692,0.804269605718038,4.45254199334973,0,0,0,0,0,0,0,0,0,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.386682873168488,0,0.767518373630648,0.137836572484531,0,0.145016693914229,0.511359764496605,8.72513949338026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8416052661202,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0.622079175323615,0,0,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0,4.34999745260876,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.1159941284455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27144668714639,0,0,0,0,1.84279131327997,0,4.06765333404958,0,0,0,0.195551382734803,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.93703684071214,10.5413795045374,2.15361907373044,5.19165401297377,22.7489805512383,21.6476313718616,14.4444465846461,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,34.3053756659216,14.5660233480395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,53.3137447302085,36.6007245273142,48.0962555518635,37.7053525316275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09056134664514,3.03074539889327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,9.92422356778589,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0.428859265059938,0,0,0.347716544605159,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,7.12171720906684,31.6201445117241,24.3561030581022,15.5427517778925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83491713361816,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0.26721740526556,0,0,0.151557396436479,0,0,0,23.8822059729099,12.3793504361145,0,0,0,0.572824424503484,2.62752345645685,37.2295638903804,72.2112265289943,2.55937801455433,1.14755528628282,12.9737539052945,0,0,0,0,14.0784565442073,0,0,0,3.22038069745642,0 | |phase1_expression=2.54349730978779,6.63711624062048,3.94672331468719,4.00293193412522,8.04529969969118,5.23403114460221,2.53299878168311,1.26343974685366,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0.919463387397059,0,0,0,0.427114777637135,0,0,0,0,0.37223371266318,0.168776332241266,0.68205903612839,0,0.0920498986422993,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15825045334063,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992431231275107,0.153461973288062,0.280660094433074,1.28139149255701,3.58195074346692,0.804269605718038,4.45254199334973,0,0,0,0,0,0,0,0,0,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.386682873168488,0,0.767518373630648,0.137836572484531,0,0.145016693914229,0.511359764496605,8.72513949338026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8416052661202,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0.622079175323615,0,0,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0,4.34999745260876,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.1159941284455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27144668714639,0,0,0,0,1.84279131327997,0,4.06765333404958,0,0,0,0.195551382734803,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.93703684071214,10.5413795045374,2.15361907373044,5.19165401297377,22.7489805512383,21.6476313718616,14.4444465846461,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,34.3053756659216,14.5660233480395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,53.3137447302085,36.6007245273142,48.0962555518635,37.7053525316275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09056134664514,3.03074539889327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,9.92422356778589,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0.428859265059938,0,0,0.347716544605159,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,7.12171720906684,31.6201445117241,24.3561030581022,15.5427517778925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83491713361816,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0.26721740526556,0,0,0.151557396436479,0,0,0,23.8822059729099,12.3793504361145,0,0,0,0.572824424503484,2.62752345645685,37.2295638903804,72.2112265289943,2.55937801455433,1.14755528628282,12.9737539052945,0,0,0,0,14.0784565442073,0,0,0,3.22038069745642,0 | ||
|short_description=p1@SGCG | |short_description=p1@SGCG | ||
}} | }} |
Latest revision as of 20:46, 16 September 2015
Short description: | p1@SGCG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SGCG_5end |
Coexpression cluster: | C31_skeletal_tongue_diaphragm_throat_penis_skin_trachea |
Association with transcript: | 0bp_to_ENST00000545013_5end |
EntrezGene: | SGCG |
HGNC: | 10809 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 4.14e-49 | 15 |
adipocyte of omentum tissue | 1.91e-12 | 3 |
adipocyte of breast | 9.57e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
omentum | 5.65e-16 | 6 |
peritoneum | 5.65e-16 | 6 |
abdominal cavity | 5.65e-16 | 6 |
visceral peritoneum | 5.65e-16 | 6 |
cardiac chamber | 7.03e-13 | 3 |
adipose tissue | 1.21e-12 | 14 |
valve | 1.63e-12 | 3 |
cardiac mesenchyme | 1.63e-12 | 3 |
cardial valve | 1.63e-12 | 3 |
tunica intima | 1.63e-12 | 3 |
heart layer | 1.63e-12 | 3 |
endocardium | 1.63e-12 | 3 |
endocardial cushion | 1.63e-12 | 3 |
presumptive endocardium | 1.63e-12 | 3 |
primary circulatory organ | 1.05e-10 | 27 |
adult organism | 2.39e-10 | 114 |
throat | 2.06e-09 | 2 |
muscle structure | 2.33e-09 | 2 |
muscle organ | 2.33e-09 | 2 |
cardiac atrium | 5.05e-09 | 2 |
future cardiac atrium | 5.05e-09 | 2 |
perirenal fat | 6.43e-09 | 2 |
atrioventricular valve | 9.20e-09 | 2 |
open tracheal system trachea | 9.95e-09 | 2 |
compound organ | 1.41e-08 | 68 |
cavity lining | 7.41e-08 | 12 |
serous membrane | 7.41e-08 | 12 |
tongue | 8.13e-07 | 3 |
gustatory system | 8.13e-07 | 3 |
future tongue | 8.13e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
heart disease | 3.23e-09 | 2 |