FFCP PHASE1:Hg19::chr2:3622817..3622828,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:3622817..3622828,+
|short_description=p4@RPS7
|description=CAGE_peak_4_at_RPS7_5end
|association_with_transcript=22bp_to_ENST00000304921_5end
|EntrezGene=...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6201 | |EntrezGene=6201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10440 | |HGNC=10440 | ||
|TSSclassifier=strong | |||
|UniProt=P62081 | |UniProt=P62081 | ||
|association_with_transcript=22bp_to_ENST00000304921_5end | |||
|cluster_id=chr2:3622817..3622828,+ | |||
|coexpression_cluster_id=C1236 | |||
|description=CAGE_peak_4_at_RPS7_5end | |||
|id=chr2:3622817..3622828,+ | |||
|ontology_enrichment_celltype=CL:0000548!7.39e-22!679;CL:0000004!7.39e-22!679;CL:0000255!7.39e-22!679;CL:0000012!8.60e-22!682;CL:0002321!4.25e-19!248;CL:0000220!6.91e-19!246;CL:0000003!2.97e-13!722;CL:0000066!2.98e-13!254;CL:0000144!7.91e-12!625;CL:0002076!7.35e-10!43;CL:0000393!7.76e-10!60;CL:0000211!7.76e-10!60;CL:0000680!1.04e-09!57;CL:0000056!1.04e-09!57;CL:0000355!1.04e-09!57;CL:0000055!2.92e-09!180;CL:0000187!3.98e-09!54;CL:0002371!8.45e-09!591;CL:0000183!6.44e-08!59;CL:0000223!3.19e-07!59;CL:0002368!6.81e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.03e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.10e-13,250;CL:0000066,9.74e-10,253;CL:0000393,5.00e-09,61;CL:0000211,5.00e-09,61;CL:0000680,6.65e-09,58;CL:0000056,6.65e-09,58;CL:0000355,6.65e-09,58;CL:0000187,3.20e-08,55;CL:0002368,1.35e-07,13;CL:0002076,1.71e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!2.92e-17!239;DOID:162!7.34e-17!235;DOID:0050687!3.57e-10!143;DOID:0050686!2.35e-08!137;DOID:305!5.45e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.97e-09,235;DOID:14566,2.57e-09,239 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.02e-11!238;UBERON:0009142!1.02e-11!238;UBERON:0004290!1.04e-10!70;UBERON:0000914!1.14e-10!83;UBERON:0002329!1.14e-10!83;UBERON:0003077!1.14e-10!83;UBERON:0003059!1.14e-10!83;UBERON:0007282!1.14e-10!83;UBERON:0009618!1.14e-10!83;UBERON:0007285!1.14e-10!83;UBERON:0000486!2.63e-10!82;UBERON:0002100!5.84e-09!216;UBERON:0000490!8.97e-09!138;UBERON:0001134!1.55e-08!61;UBERON:0002036!1.55e-08!61;UBERON:0003082!1.55e-08!61;UBERON:0002385!5.90e-08!63;UBERON:0001015!5.90e-08!63;UBERON:0000383!5.90e-08!63;UBERON:0005256!2.05e-07!143;UBERON:0005153!7.25e-07!37 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,2.31e-10,71;UBERON:0003059,2.31e-10,71;UBERON:0007282,2.31e-10,71;UBERON:0004290,2.31e-10,71;UBERON:0009618,2.31e-10,71;UBERON:0007503,3.24e-10,78;UBERON:0003077,5.39e-10,72;UBERON:0007285,5.39e-10,72;UBERON:0007524,1.22e-09,73;UBERON:0000490,1.81e-09,148;UBERON:0000486,4.17e-09,83;UBERON:0002100,6.96e-09,199;UBERON:0005256,8.01e-09,122;UBERON:0001134,6.25e-08,62;UBERON:0002036,6.25e-08,62;UBERON:0003082,6.25e-08,62;UBERON:0002385,2.72e-07,64;UBERON:0001015,2.72e-07,64;UBERON:0000383,2.72e-07,64;UBERON:0003104,3.29e-07,160;UBERON:0009142,3.29e-07,160 | |||
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| ||
|short_description=p4@RPS7 | |||
}} | }} |
Latest revision as of 00:47, 17 September 2015
Short description: | p4@RPS7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RPS7_5end |
Coexpression cluster: | C1236_acute_Mesenchymal_iPS_Skeletal_Bronchial_chronic_embryonic |
Association with transcript: | 22bp_to_ENST00000304921_5end |
EntrezGene: | RPS7 |
HGNC: | 10440 |
UniProt: | P62081 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.10e-13 | 250 |
epithelial cell | 9.74e-10 | 253 |
electrically responsive cell | 5.00e-09 | 61 |
electrically active cell | 5.00e-09 | 61 |
muscle precursor cell | 6.65e-09 | 58 |
myoblast | 6.65e-09 | 58 |
multi-potent skeletal muscle stem cell | 6.65e-09 | 58 |
muscle cell | 3.20e-08 | 55 |
respiratory epithelial cell | 1.35e-07 | 13 |
endo-epithelial cell | 1.71e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
somite | 2.31e-10 | 71 |
presomitic mesoderm | 2.31e-10 | 71 |
presumptive segmental plate | 2.31e-10 | 71 |
dermomyotome | 2.31e-10 | 71 |
trunk paraxial mesoderm | 2.31e-10 | 71 |
epithelial vesicle | 3.24e-10 | 78 |
paraxial mesoderm | 5.39e-10 | 72 |
presumptive paraxial mesoderm | 5.39e-10 | 72 |
dense mesenchyme tissue | 1.22e-09 | 73 |
unilaminar epithelium | 1.81e-09 | 148 |
multilaminar epithelium | 4.17e-09 | 83 |
trunk | 6.96e-09 | 199 |
trunk mesenchyme | 8.01e-09 | 122 |
skeletal muscle tissue | 6.25e-08 | 62 |
striated muscle tissue | 6.25e-08 | 62 |
myotome | 6.25e-08 | 62 |
muscle tissue | 2.72e-07 | 64 |
musculature | 2.72e-07 | 64 |
musculature of body | 2.72e-07 | 64 |
mesenchyme | 3.29e-07 | 160 |
entire embryonic mesenchyme | 3.29e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.97e-09 | 235 |
disease of cellular proliferation | 2.57e-09 | 239 |