FFCP PHASE1:Hg19::chr8:145641826..145641839,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55630 | |EntrezGene=55630 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17129 | |HGNC=17129 | ||
|TSSclassifier=strong | |||
|UniProt=A6NDY5 | |UniProt=A6NDY5 | ||
|association_with_transcript=56bp_to_ENST00000276833_5end | |association_with_transcript=56bp_to_ENST00000276833_5end | ||
|cluster_id=chr8:145641826..145641839,- | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_5_at_SLC39A4_5end | |description=CAGE_peak_5_at_SLC39A4_5end | ||
|id=chr8:145641826..145641839,- | |id=chr8:145641826..145641839,- | ||
|ontology_enrichment_celltype=CL:0000181!3.72e-11!12;CL:0000417!3.72e-11!12;CL:0000668!3.72e-11!12;CL:0000414!3.72e-11!12;CL:0000412!3.72e-11!12;CL:0000182!3.72e-11!12 | |ontology_enrichment_celltype=CL:0000181!3.72e-11!12;CL:0000417!3.72e-11!12;CL:0000668!3.72e-11!12;CL:0000414!3.72e-11!12;CL:0000412!3.72e-11!12;CL:0000182!3.72e-11!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.66e-20;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.35e-20,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.29e-13;11!UBERON:0003104;2.97e-12;31!UBERON:0009497;3.56e-11;13!UBERON:0003918;5.59e-07;10!UBERON:0007687;5.59e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!3.78e-10!27;UBERON:0009497!5.26e-08!25;UBERON:0000015!5.26e-08!25;UBERON:0002423!5.26e-08!25;UBERON:0006235!5.26e-08!25;UBERON:0004161!5.26e-08!25;UBERON:0007499!5.42e-08!25;UBERON:0005409!8.89e-08!35;UBERON:0009856!1.12e-07!26;UBERON:0002107!4.33e-07!19;UBERON:0006925!4.33e-07!19;UBERON:0008836!4.33e-07!19;UBERON:0004921!5.93e-07!129;UBERON:0004185!5.93e-07!129 | |ontology_enrichment_uberon=UBERON:0000160!3.78e-10!27;UBERON:0009497!5.26e-08!25;UBERON:0000015!5.26e-08!25;UBERON:0002423!5.26e-08!25;UBERON:0006235!5.26e-08!25;UBERON:0004161!5.26e-08!25;UBERON:0007499!5.42e-08!25;UBERON:0005409!8.89e-08!35;UBERON:0009856!1.12e-07!26;UBERON:0002107!4.33e-07!19;UBERON:0006925!4.33e-07!19;UBERON:0008836!4.33e-07!19;UBERON:0004921!5.93e-07!129;UBERON:0004185!5.93e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002108;1.44e-28;4!UBERON:0000160;1.30e-21;17!UBERON:0005409;6.15e-17;22!UBERON:0002107;4.35e-13;19!UBERON:0006925;4.35e-13;19!UBERON:0004921;2.32e-10;33!UBERON:0002423;5.09e-10;25!UBERON:0001155;7.25e-08;9!UBERON:0002365;9.79e-08;31!UBERON:0002330;9.79e-08;31!UBERON:0002368;2.09e-07;33!UBERON:0005172;9.69e-07;52!UBERON:0005173;9.69e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,1.44e-28,4;UBERON:0000160,1.30e-21,17;UBERON:0005409,5.43e-15,25;UBERON:0002107,3.83e-13,19;UBERON:0006925,3.83e-13,19;UBERON:0008836,3.83e-13,19;UBERON:0008835,2.15e-11,22;UBERON:0003894,2.15e-11,22;UBERON:0009854,6.54e-11,23;UBERON:0007499,4.63e-10,25;UBERON:0009497,4.63e-10,25;UBERON:0000015,4.63e-10,25;UBERON:0002423,4.63e-10,25;UBERON:0006235,4.63e-10,25;UBERON:0004161,4.63e-10,25;UBERON:0005172,7.00e-10,54;UBERON:0005173,7.00e-10,54;UBERON:0004921,1.10e-09,118;UBERON:0009856,1.10e-09,26;UBERON:0002417,7.23e-09,60;UBERON:0000916,7.23e-09,60;UBERON:0002365,3.66e-08,31;UBERON:0002330,3.66e-08,31;UBERON:0001155,7.25e-08,9;UBERON:0001007,9.94e-08,145;UBERON:0001555,9.94e-08,145;UBERON:0007026,9.94e-08,145;UBERON:0002368,2.96e-07,35;UBERON:0004119,6.36e-07,160;UBERON:0000925,6.36e-07,160;UBERON:0006595,6.36e-07,160 | |||
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|short_description=p5@SLC39A4 | |short_description=p5@SLC39A4 | ||
}} | }} |
Latest revision as of 01:52, 17 September 2015
Short description: | p5@SLC39A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SLC39A4_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 56bp_to_ENST00000276833_5end |
EntrezGene: | SLC39A4 |
HGNC: | 17129 |
UniProt: | A6NDY5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.35e-20 | 12 |
Ontology term | p-value | n |
---|---|---|
small intestine | 1.44e-28 | 4 |
intestine | 1.30e-21 | 17 |
gastrointestinal system | 5.43e-15 | 25 |
liver | 3.83e-13 | 19 |
digestive gland | 3.83e-13 | 19 |
liver bud | 3.83e-13 | 19 |
hepatic diverticulum | 2.15e-11 | 22 |
liver primordium | 2.15e-11 | 22 |
digestive tract diverticulum | 6.54e-11 | 23 |
epithelial sac | 4.63e-10 | 25 |
epithelium of foregut-midgut junction | 4.63e-10 | 25 |
anatomical boundary | 4.63e-10 | 25 |
hepatobiliary system | 4.63e-10 | 25 |
foregut-midgut junction | 4.63e-10 | 25 |
septum transversum | 4.63e-10 | 25 |
abdomen element | 7.00e-10 | 54 |
abdominal segment element | 7.00e-10 | 54 |
subdivision of digestive tract | 1.10e-09 | 118 |
sac | 1.10e-09 | 26 |
abdominal segment of trunk | 7.23e-09 | 60 |
abdomen | 7.23e-09 | 60 |
exocrine gland | 3.66e-08 | 31 |
exocrine system | 3.66e-08 | 31 |
colon | 7.25e-08 | 9 |
digestive system | 9.94e-08 | 145 |
digestive tract | 9.94e-08 | 145 |
primitive gut | 9.94e-08 | 145 |
endocrine gland | 2.96e-07 | 35 |
endoderm-derived structure | 6.36e-07 | 160 |
endoderm | 6.36e-07 | 160 |
presumptive endoderm | 6.36e-07 | 160 |