FFCP PHASE1:Hg19::chr20:5297594..5297605,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=128674 | |EntrezGene=128674 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15836 | |HGNC=15836 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-216bp_to_ENST00000546004,uc010zqy.1_5end | |association_with_transcript=-216bp_to_ENST00000546004,uc010zqy.1_5end | ||
|cluster_id=chr20:5297594..5297605,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_1_at_PROKR2_5end | |description=CAGE_peak_1_at_PROKR2_5end | ||
|id=chr20:5297594..5297605,- | |id=chr20:5297594..5297605,- | ||
|ontology_enrichment_celltype=CL:0000540!2.20e-18!6;CL:0000031!2.20e-18!6;CL:0000404!2.20e-18!6;CL:0000047!1.01e-13!8;CL:0002322!7.81e-08!5 | |ontology_enrichment_celltype=CL:0000540!2.20e-18!6;CL:0000031!2.20e-18!6;CL:0000404!2.20e-18!6;CL:0000047!1.01e-13!8;CL:0002322!7.81e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0000540;1.15e-19;6!CL:0000404;1.15e-19;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.15e-19,6;CL:0000031,1.15e-19,6;CL:0000404,1.15e-19,6;CL:0000047,5.04e-15,8 | |||
|ontology_enrichment_development_v019=CL:0000031;1.15e-19;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!4.69e-58!22;UBERON:0001869!8.21e-54!32;UBERON:0000956!7.56e-51!25;UBERON:0000203!7.56e-51!25;UBERON:0001893!1.93e-50!34;UBERON:0001950!2.29e-50!20;UBERON:0002020!3.50e-50!34;UBERON:0003528!3.50e-50!34;UBERON:0002791!5.92e-47!33;UBERON:0001017!2.79e-46!82;UBERON:0002780!2.41e-45!41;UBERON:0001890!2.41e-45!41;UBERON:0006240!2.41e-45!41;UBERON:0000073!1.24e-44!94;UBERON:0001016!1.24e-44!94;UBERON:0003080!3.65e-44!42;UBERON:0005743!7.71e-44!86;UBERON:0001049!1.59e-37!57;UBERON:0005068!1.59e-37!57;UBERON:0006241!1.59e-37!57;UBERON:0007135!1.59e-37!57;UBERON:0002616!4.45e-36!59;UBERON:0000955!1.80e-35!69;UBERON:0006238!1.80e-35!69;UBERON:0003056!5.67e-29!61;UBERON:0003075!2.23e-25!86;UBERON:0007284!2.23e-25!86;UBERON:0002346!5.36e-24!90;UBERON:0001872!1.39e-22!5;UBERON:0004121!8.59e-22!169;UBERON:0000924!4.03e-21!173;UBERON:0006601!4.03e-21!173;UBERON:0001871!2.43e-19!7;UBERON:0000033!3.83e-19!123;UBERON:0000200!4.05e-18!6;UBERON:0000153!5.66e-18!129;UBERON:0007811!5.66e-18!129;UBERON:0007023!1.61e-17!115;UBERON:0000349!5.18e-14!5;UBERON:0002771!1.13e-13!3;UBERON:0001954!1.10e-09!2;UBERON:0003022!1.10e-09!2;UBERON:0002421!1.10e-09!2;UBERON:0002600!1.10e-09!2;UBERON:0000025!6.27e-09!194;UBERON:0002021!1.53e-08!5;UBERON:0000064!4.36e-08!219;UBERON:0004111!8.26e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;7.80e-14;49!UBERON:0001950;7.28e-13;20!UBERON:0002619;8.25e-12;22!UBERON:0002114;6.73e-11;2!UBERON:0000956;1.57e-10;25!UBERON:0000203;1.57e-10;25!UBERON:0002791;4.82e-08;32!UBERON:0001869;7.29e-08;32!UBERON:0003528;1.37e-07;34!UBERON:0002020;1.37e-07;34!UBERON:0002108;4.79e-07;4!UBERON:0001872;5.54e-07;5!UBERON:0002021;6.39e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,7.43e-13,20;UBERON:0001017,1.71e-12,81;UBERON:0002619,8.40e-12,22;UBERON:0001016,2.71e-11,89;UBERON:0002114,6.73e-11,2;UBERON:0000956,1.60e-10,25;UBERON:0000203,1.60e-10,25;UBERON:0002791,1.96e-08,32;UBERON:0001869,1.96e-08,32;UBERON:0003528,5.46e-08,34;UBERON:0002020,5.46e-08,34;UBERON:0001893,5.46e-08,34;UBERON:0002108,4.79e-07,4;UBERON:0001872,5.70e-07,5;UBERON:0000955,5.93e-07,68;UBERON:0006238,5.93e-07,68;UBERON:0002021,6.39e-07,5;UBERON:0002780,9.24e-07,41;UBERON:0001890,9.24e-07,41;UBERON:0003080,9.24e-07,41;UBERON:0006240,9.24e-07,41 | |||
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| ||
|short_description=p1@PROKR2 | |short_description=p1@PROKR2 | ||
}} | }} |
Latest revision as of 02:44, 17 September 2015
Short description: | p1@PROKR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PROKR2_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -216bp_to_ENST00000546004, uc010zqy.1_5end |
EntrezGene: | PROKR2 |
HGNC: | 15836 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.15e-19 | 6 |
neuroblast | 1.15e-19 | 6 |
electrically signaling cell | 1.15e-19 | 6 |
neuronal stem cell | 5.04e-15 | 8 |
Ontology term | p-value | n |
---|---|---|
neocortex | 7.43e-13 | 20 |
central nervous system | 1.71e-12 | 81 |
regional part of cerebral cortex | 8.40e-12 | 22 |
nervous system | 2.71e-11 | 89 |
duodenum | 6.73e-11 | 2 |
cerebral cortex | 1.60e-10 | 25 |
pallium | 1.60e-10 | 25 |
regional part of telencephalon | 1.96e-08 | 32 |
cerebral hemisphere | 1.96e-08 | 32 |
brain grey matter | 5.46e-08 | 34 |
gray matter | 5.46e-08 | 34 |
telencephalon | 5.46e-08 | 34 |
small intestine | 4.79e-07 | 4 |
parietal lobe | 5.70e-07 | 5 |
brain | 5.93e-07 | 68 |
future brain | 5.93e-07 | 68 |
occipital lobe | 6.39e-07 | 5 |
regional part of forebrain | 9.24e-07 | 41 |
forebrain | 9.24e-07 | 41 |
anterior neural tube | 9.24e-07 | 41 |
future forebrain | 9.24e-07 | 41 |