FFCP PHASE1:Hg19::chr20:57416667..57416698,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2778 | |EntrezGene=2778 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4392 | |HGNC=4392 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000462499,ENST00000482112,ENST00000490374,ENST00000493744,uc002xzu.3,uc010gjq.2_5end | |association_with_transcript=0bp_to_ENST00000462499,ENST00000482112,ENST00000490374,ENST00000493744,uc002xzu.3,uc010gjq.2_5end | ||
|cluster_id=chr20:57416667..57416698,+ | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_33_at_GNAS_5end | |description=CAGE_peak_33_at_GNAS_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000039!9.33e-09!7;CL:0000586!9.33e-09!7 | |ontology_enrichment_celltype=CL:0000039!9.33e-09!7;CL:0000586!9.33e-09!7 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.10e-23;7!CL:0000586;1.10e-23;7 | |ontology_enrichment_celltype_v019=CL:0000039;1.10e-23;7!CL:0000586;1.10e-23;7 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.14e-23,7;CL:0000586,1.14e-23,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.73e-45;10!UBERON:0005564;3.73e-45;10!UBERON:0006298;4.69e-19;1 | |ontology_enrichment_development_v019=UBERON:0009117;3.73e-45;10!UBERON:0005564;3.73e-45;10!UBERON:0006298;4.69e-19;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;5.59e-08;22!DOID:2994;5.59e-08;22 | |ontology_enrichment_disease_v019=DOID:3095;5.59e-08;22!DOID:2994;5.59e-08;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,5.66e-08,22;DOID:2994,5.66e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0002298!1.07e-26!8;UBERON:0003135!2.99e-20!11;UBERON:0000473!5.47e-20!8;UBERON:0003076!5.58e-19!15;UBERON:0003057!5.58e-19!15;UBERON:0001896!6.14e-19!3;UBERON:0005290!6.14e-19!3;UBERON:0010096!6.14e-19!3;UBERON:0000988!1.36e-18!3;UBERON:0004733!1.21e-17!12;UBERON:0002028!1.21e-17!12;UBERON:0007277!1.21e-17!12;UBERON:0007023!5.25e-17!115;UBERON:0004732!3.00e-16!13;UBERON:0003296!7.92e-15!4;UBERON:0010133!7.92e-15!4;UBERON:0000007!7.57e-14!2;UBERON:0002148!2.99e-13!2;UBERON:0009662!2.99e-13!2;UBERON:0003127!7.05e-13!2;UBERON:0001049!1.15e-10!57;UBERON:0005068!1.15e-10!57;UBERON:0006241!1.15e-10!57;UBERON:0007135!1.15e-10!57;UBERON:0003101!7.64e-10!22;UBERON:0000079!7.64e-10!22;UBERON:0001723!3.98e-09!3;UBERON:0006331!3.98e-09!3;UBERON:0001033!3.98e-09!3;UBERON:0010056!3.98e-09!3;UBERON:0001894!1.12e-08!7;UBERON:0006222!1.12e-08!7;UBERON:0002616!2.16e-08!59;UBERON:0001017!3.55e-08!82;UBERON:0005743!1.05e-07!86;UBERON:0001736!1.10e-07!1;UBERON:0006298!1.10e-07!1;UBERON:0000991!1.86e-07!21;UBERON:0009196!1.86e-07!21;UBERON:0009117!1.86e-07!21;UBERON:0005564!1.86e-07!21;UBERON:0001301!3.40e-07!1;UBERON:0004176!4.20e-07!22;UBERON:0002902!4.34e-07!1;UBERON:0009899!4.34e-07!1;UBERON:0000955!7.87e-07!69;UBERON:0006238!7.87e-07!69;UBERON:0000073!8.72e-07!94;UBERON:0001016!8.72e-07!94 | |ontology_enrichment_uberon=UBERON:0002298!1.07e-26!8;UBERON:0003135!2.99e-20!11;UBERON:0000473!5.47e-20!8;UBERON:0003076!5.58e-19!15;UBERON:0003057!5.58e-19!15;UBERON:0001896!6.14e-19!3;UBERON:0005290!6.14e-19!3;UBERON:0010096!6.14e-19!3;UBERON:0000988!1.36e-18!3;UBERON:0004733!1.21e-17!12;UBERON:0002028!1.21e-17!12;UBERON:0007277!1.21e-17!12;UBERON:0007023!5.25e-17!115;UBERON:0004732!3.00e-16!13;UBERON:0003296!7.92e-15!4;UBERON:0010133!7.92e-15!4;UBERON:0000007!7.57e-14!2;UBERON:0002148!2.99e-13!2;UBERON:0009662!2.99e-13!2;UBERON:0003127!7.05e-13!2;UBERON:0001049!1.15e-10!57;UBERON:0005068!1.15e-10!57;UBERON:0006241!1.15e-10!57;UBERON:0007135!1.15e-10!57;UBERON:0003101!7.64e-10!22;UBERON:0000079!7.64e-10!22;UBERON:0001723!3.98e-09!3;UBERON:0006331!3.98e-09!3;UBERON:0001033!3.98e-09!3;UBERON:0010056!3.98e-09!3;UBERON:0001894!1.12e-08!7;UBERON:0006222!1.12e-08!7;UBERON:0002616!2.16e-08!59;UBERON:0001017!3.55e-08!82;UBERON:0005743!1.05e-07!86;UBERON:0001736!1.10e-07!1;UBERON:0006298!1.10e-07!1;UBERON:0000991!1.86e-07!21;UBERON:0009196!1.86e-07!21;UBERON:0009117!1.86e-07!21;UBERON:0005564!1.86e-07!21;UBERON:0001301!3.40e-07!1;UBERON:0004176!4.20e-07!22;UBERON:0002902!4.34e-07!1;UBERON:0009899!4.34e-07!1;UBERON:0000955!7.87e-07!69;UBERON:0006238!7.87e-07!69;UBERON:0000073!8.72e-07!94;UBERON:0001016!8.72e-07!94 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.40e-56;8!UBERON:0003135;4.41e-41;11!UBERON:0000007;7.48e-37;2!UBERON:0000991;1.19e-21;21!UBERON:0003101;1.13e-20;22!UBERON:0000079;1.13e-20;22!UBERON:0001736;4.69e-19;1!UBERON:0003296;5.39e-19;4!UBERON:0010133;5.39e-19;4!UBERON:0001894;2.76e-11;7!UBERON:0001829;3.27e-10;2!UBERON:0002553;5.85e-08;52!UBERON:0003133;7.16e-08;44!UBERON:0002323;1.06e-07;45!UBERON:0001723;3.16e-07;3!UBERON:0001033;3.16e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0000473;2.40e-56;8!UBERON:0003135;4.41e-41;11!UBERON:0000007;7.48e-37;2!UBERON:0000991;1.19e-21;21!UBERON:0003101;1.13e-20;22!UBERON:0000079;1.13e-20;22!UBERON:0001736;4.69e-19;1!UBERON:0003296;5.39e-19;4!UBERON:0010133;5.39e-19;4!UBERON:0001894;2.76e-11;7!UBERON:0001829;3.27e-10;2!UBERON:0002553;5.85e-08;52!UBERON:0003133;7.16e-08;44!UBERON:0002323;1.06e-07;45!UBERON:0001723;3.16e-07;3!UBERON:0001033;3.16e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.54e-56,8;UBERON:0003135,4.59e-41,11;UBERON:0000007,6.83e-37,2;UBERON:0000991,1.22e-21,21;UBERON:0009196,1.22e-21,21;UBERON:0009117,1.22e-21,21;UBERON:0005564,1.22e-21,21;UBERON:0004176,1.15e-20,22;UBERON:0003101,1.15e-20,22;UBERON:0000079,1.15e-20,22;UBERON:0001736,3.91e-19,1;UBERON:0006298,3.91e-19,1;UBERON:0003296,5.15e-19,4;UBERON:0010133,5.15e-19,4;UBERON:0001894,2.69e-11,7;UBERON:0006222,2.69e-11,7;UBERON:0002553,1.53e-10,61;UBERON:0001829,2.99e-10,2;UBERON:0002323,6.04e-10,46;UBERON:0003133,1.56e-09,48;UBERON:0004458,2.44e-09,49;UBERON:0003886,1.78e-08,54;UBERON:0005156,9.26e-08,59;UBERON:0000990,9.26e-08,59;UBERON:0001723,3.35e-07,3;UBERON:0001033,3.35e-07,3;UBERON:0010056,3.35e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.0221416173829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.34033500855552,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.221858103073705,0.558867626472451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,3.64179362541979,5.23623040107984,0.79832133146375,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588925401344836,0,0,0,0,0,0,0,0,0,0,1.37618785021362,0,0,0,0,0,0,0,0,0,0,0,1.32585478664576,0,10.0165440492981,3.0084904715085,34.1004141982077,59.7560010248278,0,0,0.213233981900981,0,0,0,0,0,0,0.217716747896961,1.02669990325584,0,0.143444410785353,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.0221416173829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.34033500855552,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.221858103073705,0.558867626472451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,3.64179362541979,5.23623040107984,0.79832133146375,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588925401344836,0,0,0,0,0,0,0,0,0,0,1.37618785021362,0,0,0,0,0,0,0,0,0,0,0,1.32585478664576,0,10.0165440492981,3.0084904715085,34.1004141982077,59.7560010248278,0,0,0.213233981900981,0,0,0,0,0,0,0.217716747896961,1.02669990325584,0,0.143444410785353,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p33@GNAS | |short_description=p33@GNAS | ||
}} | }} |
Latest revision as of 05:56, 17 September 2015
Short description: | p33@GNAS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_33_at_GNAS_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000462499, ENST00000482112, ENST00000490374, ENST00000493744, uc002xzu.3, uc010gjq.2_5end |
EntrezGene: | GNAS |
HGNC: | 4392 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.14e-23 | 7 |
germ cell | 1.14e-23 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 2.54e-56 | 8 |
male reproductive organ | 4.59e-41 | 11 |
pituitary gland | 6.83e-37 | 2 |
gonad | 1.22e-21 | 21 |
indifferent external genitalia | 1.22e-21 | 21 |
indifferent gonad | 1.22e-21 | 21 |
gonad primordium | 1.22e-21 | 21 |
external genitalia | 1.15e-20 | 22 |
male organism | 1.15e-20 | 22 |
male reproductive system | 1.15e-20 | 22 |
submandibular gland | 3.91e-19 | 1 |
submandibular gland primordium | 3.91e-19 | 1 |
gland of diencephalon | 5.15e-19 | 4 |
neuroendocrine gland | 5.15e-19 | 4 |
diencephalon | 2.69e-11 | 7 |
future diencephalon | 2.69e-11 | 7 |
anatomical cavity | 1.53e-10 | 61 |
major salivary gland | 2.99e-10 | 2 |
body cavity | 6.04e-10 | 46 |
reproductive organ | 1.56e-09 | 48 |
body cavity or lining | 2.44e-09 | 49 |
body cavity precursor | 1.78e-08 | 54 |
reproductive structure | 9.26e-08 | 59 |
reproductive system | 9.26e-08 | 59 |
tongue | 3.35e-07 | 3 |
gustatory system | 3.35e-07 | 3 |
future tongue | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.66e-08 | 22 |
germ cell cancer | 5.66e-08 | 22 |