FFCP PHASE1:Hg19::chr1:26798955..26798996,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3151 | |EntrezGene=3151 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4986 | |HGNC=4986 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000460563,ENST00000464888_5end | |association_with_transcript=0bp_to_ENST00000460563,ENST00000464888_5end | ||
|cluster_id=chr1:26798955..26798996,+ | |||
|description=CAGE_peak_1_at_HMGN2_5end | |description=CAGE_peak_1_at_HMGN2_5end | ||
|id=chr1:26798955..26798996,+ | |id=chr1:26798955..26798996,+ | ||
|ontology_enrichment_celltype=CL:0000037!2.84e-23!172;CL:0000566!2.84e-23!172;CL:0002032!4.40e-22!165;CL:0000837!4.40e-22!165;CL:0000988!8.00e-21!182;CL:0000738!7.52e-12!140;CL:0000763!1.79e-11!112;CL:0000049!1.79e-11!112;CL:0000542!4.92e-11!53;CL:0000051!4.92e-11!53;CL:0000838!1.19e-10!52;CL:0002031!7.16e-10!124;CL:0002087!8.86e-09!119;CL:0000945!1.63e-08!24;CL:0000826!1.63e-08!24 | |ontology_enrichment_celltype=CL:0000037!2.84e-23!172;CL:0000566!2.84e-23!172;CL:0002032!4.40e-22!165;CL:0000837!4.40e-22!165;CL:0000988!8.00e-21!182;CL:0000738!7.52e-12!140;CL:0000763!1.79e-11!112;CL:0000049!1.79e-11!112;CL:0000542!4.92e-11!53;CL:0000051!4.92e-11!53;CL:0000838!1.19e-10!52;CL:0002031!7.16e-10!124;CL:0002087!8.86e-09!119;CL:0000945!1.63e-08!24;CL:0000826!1.63e-08!24 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.45e-08;24!CL:0000542;7.98e-08;53!CL:0000236;9.59e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.68e-23,168;CL:0002032,5.62e-22,161;CL:0000837,5.62e-22,161;CL:0000988,6.63e-21,177;CL:0000738,1.02e-11,136;CL:0000763,2.24e-11,108;CL:0000049,2.24e-11,108;CL:0000542,4.92e-11,53;CL:0000051,4.92e-11,53;CL:0000838,1.19e-10,52;CL:0002031,9.62e-10,120;CL:0002087,1.20e-08,115;CL:0000945,1.63e-08,24;CL:0000826,1.63e-08,24 | |||
|ontology_enrichment_development_v019=CL:0000051;7.98e-08;53 | |||
|ontology_enrichment_disease=DOID:2531!1.29e-19!51;DOID:0060083!1.29e-19!51;DOID:1240!1.56e-16!39;DOID:8692!8.57e-14!31;DOID:162!7.94e-07!235 | |ontology_enrichment_disease=DOID:2531!1.29e-19!51;DOID:0060083!1.29e-19!51;DOID:1240!1.56e-16!39;DOID:8692!8.57e-14!31;DOID:162!7.94e-07!235 | ||
|ontology_enrichment_disease_v019=DOID:8692;2.34e-13;31!DOID:1240;2.87e-13;39!DOID:2531;3.83e-12;51!DOID:0060083;3.83e-12;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.29e-19,51;DOID:0060083,1.29e-19,51;DOID:1240,1.56e-16,39;DOID:8692,8.57e-14,31;DOID:162,7.94e-07,235 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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4397944612263 | ||
|short_description=p1@HMGN2 | |short_description=p1@HMGN2 | ||
}} | }} |
Latest revision as of 05:56, 17 September 2015
Short description: | p1@HMGN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMGN2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000460563, ENST00000464888_5end |
EntrezGene: | HMGN2 |
HGNC: | 4986 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.68e-23 | 168 |
hematopoietic oligopotent progenitor cell | 5.62e-22 | 161 |
hematopoietic multipotent progenitor cell | 5.62e-22 | 161 |
hematopoietic cell | 6.63e-21 | 177 |
leukocyte | 1.02e-11 | 136 |
myeloid cell | 2.24e-11 | 108 |
common myeloid progenitor | 2.24e-11 | 108 |
lymphocyte | 4.92e-11 | 53 |
common lymphoid progenitor | 4.92e-11 | 53 |
lymphoid lineage restricted progenitor cell | 1.19e-10 | 52 |
hematopoietic lineage restricted progenitor cell | 9.62e-10 | 120 |
nongranular leukocyte | 1.20e-08 | 115 |
lymphocyte of B lineage | 1.63e-08 | 24 |
pro-B cell | 1.63e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.29e-19 | 51 |
immune system cancer | 1.29e-19 | 51 |
leukemia | 1.56e-16 | 39 |
myeloid leukemia | 8.57e-14 | 31 |
cancer | 7.94e-07 | 235 |