FFCP PHASE1:Hg19::chr9:3898653..3898681,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84850 | |EntrezGene=84850 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=28260 | |HGNC=28260 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=7bp_to_NR_026663,uc003zia.2_5end | |association_with_transcript=7bp_to_NR_026663,uc003zia.2_5end | ||
|cluster_id=chr9:3898653..3898681,+ | |||
|coexpression_cluster_id=C113 | |||
|description=CAGE_peak_1_at_GLIS3-AS1_5end | |description=CAGE_peak_1_at_GLIS3-AS1_5end | ||
|id=chr9:3898653..3898681,+ | |id=chr9:3898653..3898681,+ | ||
|ontology_enrichment_celltype=CL:1001319!5.26e-07!1;CL:1000600!5.26e-07!1 | |ontology_enrichment_celltype=CL:1001319!5.26e-07!1;CL:1000600!5.26e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000083;3.60e-11;4!CL:0002149;5.92e-08;6!CL:0002255;5.92e-08;6!CL:0000138;7.01e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000083,3.79e-11,4;CL:0002149,5.92e-08,6;CL:0002255,5.92e-08,6;CL:0000058,6.78e-08,6;CL:0000138,6.78e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0007123;2.53e-09;5 | |||
|ontology_enrichment_disease=DOID:3493!1.36e-12!2;DOID:4929!9.06e-12!2;DOID:299!4.60e-10!25;DOID:305!3.16e-07!106;DOID:3371!3.52e-07!1;DOID:4549!3.52e-07!1;DOID:5861!3.52e-07!1;DOID:6496!3.52e-07!1;DOID:3111!9.25e-07!1;DOID:3603!9.25e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:3371;2.70e-40;1!DOID:4549;2.70e-40;1!DOID:5861;2.70e-40;1!DOID:6496;2.70e-40;1!DOID:3493;4.66e-21;2!DOID:4074;6.30e-21;2!DOID:4905;6.30e-21;2!DOID:3498;6.30e-21;2!DOID:1793;3.60e-11;4!DOID:3001;5.92e-08;6!DOID:170;7.01e-08;6!DOID:201;7.01e-08;6!DOID:0060100;7.01e-08;6!DOID:299;2.28e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.21e-40,1;DOID:4549,2.21e-40,1;DOID:5861,2.21e-40,1;DOID:6496,2.21e-40,1;DOID:3493,4.66e-21,2;DOID:4074,6.96e-21,2;DOID:4905,6.96e-21,2;DOID:3498,6.96e-21,2;DOID:1793,3.79e-11,4;DOID:3001,5.92e-08,6;DOID:201,6.78e-08,6;DOID:0060100,6.78e-08,6;DOID:170,7.25e-08,6;DOID:299,2.28e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0002394!1.19e-12!4;UBERON:0003928!1.19e-12!4;UBERON:0002294!1.97e-07!7;UBERON:0001173!1.97e-07!7;UBERON:0004912!1.97e-07!7;UBERON:0004645!5.26e-07!1;UBERON:0001256!5.26e-07!1;UBERON:0001259!5.26e-07!1;UBERON:0004913!5.57e-07!1;UBERON:0003703!5.57e-07!1;UBERON:0001174!5.57e-07!1;UBERON:0004914!5.57e-07!1;UBERON:0002171!5.89e-07!1;UBERON:0006518!5.89e-07!1;UBERON:0008949!5.89e-07!1;UBERON:0000101!5.89e-07!1;UBERON:0002167!5.89e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002418;1.96e-14;3!UBERON:0004755;1.96e-14;3!UBERON:0002046;2.53e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,1.83e-14,3;UBERON:0004755,1.83e-14,3;UBERON:0002046,2.53e-09,5;UBERON:0004117,2.53e-09,5;UBERON:0007689,2.53e-09,5;UBERON:0007123,2.53e-09,5;UBERON:0003091,2.53e-09,5 | |||
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|short_description=p1@GLIS3-AS1 | |short_description=p1@GLIS3-AS1 | ||
}} | }} |
Latest revision as of 12:01, 17 September 2015
Short description: | p1@GLIS3-AS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GLIS3-AS1_5end |
Coexpression cluster: | C113_thyroid_throat_lung_lymph_small_colon_trachea |
Association with transcript: | 7bp_to_NR_026663, uc003zia.2_5end |
EntrezGene: | GLIS3-AS1 |
HGNC: | 28260 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of pancreas | 3.79e-11 | 4 |
epithelial cell of uterus | 5.92e-08 | 6 |
stromal cell of endometrium | 5.92e-08 | 6 |
chondroblast | 6.78e-08 | 6 |
chondrocyte | 6.78e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 1.83e-14 | 3 |
skeletal tissue | 1.83e-14 | 3 |
thyroid gland | 2.53e-09 | 5 |
pharyngeal pouch | 2.53e-09 | 5 |
thyroid diverticulum | 2.53e-09 | 5 |
pharyngeal pouch 2 | 2.53e-09 | 5 |
thyroid primordium | 2.53e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.21e-40 | 1 |
extraosseous chondrosarcoma | 2.21e-40 | 1 |
myxoid chondrosarcoma | 2.21e-40 | 1 |
extraskeletal myxoid chondrosarcoma | 2.21e-40 | 1 |
signet ring cell adenocarcinoma | 4.66e-21 | 2 |
pancreas adenocarcinoma | 6.96e-21 | 2 |
pancreatic carcinoma | 6.96e-21 | 2 |
pancreatic ductal adenocarcinoma | 6.96e-21 | 2 |
pancreatic cancer | 3.79e-11 | 4 |
female reproductive endometrioid cancer | 5.92e-08 | 6 |
connective tissue cancer | 6.78e-08 | 6 |
musculoskeletal system cancer | 6.78e-08 | 6 |
endocrine gland cancer | 7.25e-08 | 6 |
adenocarcinoma | 2.28e-07 | 25 |