FFCP PHASE1:Hg19::chr2:47601065..47601124,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4072 | |EntrezGene=4072 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11529 | |HGNC=11529 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=151bp_to_ENST00000490733_5end | |association_with_transcript=151bp_to_ENST00000490733_5end | ||
|cluster_id=chr2:47601065..47601124,+ | |||
|coexpression_cluster_id=C1908 | |coexpression_cluster_id=C1908 | ||
|description=CAGE_peak_5_at_EPCAM_5end | |description=CAGE_peak_5_at_EPCAM_5end | ||
|id=chr2:47601065..47601124,+ | |id=chr2:47601065..47601124,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.10e-18!254;CL:0000223!1.16e-10!59;CL:0000039!2.72e-08!7;CL:0000586!2.72e-08!7;CL:0002076!8.20e-08!43 | |ontology_enrichment_celltype=CL:0000066!2.10e-18!254;CL:0000223!1.16e-10!59;CL:0000039!2.72e-08!7;CL:0000586!2.72e-08!7;CL:0002076!8.20e-08!43 | ||
|ontology_enrichment_celltype_v019=CL:0000039;6.58e-12;7!CL:0000586;6.58e-12;7!CL:0002322;4.93e-11;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.10e-14,253;CL:0000039,1.16e-11,7;CL:0000586,1.16e-11,7;CL:0002322,4.54e-11,5;CL:0000223,1.87e-09,58 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.62e-08;10!UBERON:0005564;5.62e-08;10 | |||
|ontology_enrichment_disease=DOID:305!6.30e-34!106;DOID:0050687!6.91e-23!143;DOID:299!9.42e-12!25;DOID:162!8.95e-11!235;DOID:14566!4.27e-10!239;DOID:1749!4.93e-10!14;DOID:7!9.24e-07!39 | |ontology_enrichment_disease=DOID:305!6.30e-34!106;DOID:0050687!6.91e-23!143;DOID:299!9.42e-12!25;DOID:162!8.95e-11!235;DOID:14566!4.27e-10!239;DOID:1749!4.93e-10!14;DOID:7!9.24e-07!39 | ||
|ontology_enrichment_disease_v019=DOID:299;4.29e-15;25!DOID:305;8.13e-13;106!DOID:3119;1.89e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.46e-27,106;DOID:0050687,1.03e-20,143;DOID:299,2.25e-15,25;DOID:162,5.72e-10,235;DOID:3119,1.28e-09,14;DOID:14566,1.60e-09,239 | |||
|ontology_enrichment_uberon=UBERON:0001007!6.31e-16!155;UBERON:0001555!6.31e-16!155;UBERON:0007026!6.31e-16!155;UBERON:0000466!4.75e-14!126;UBERON:0004921!1.10e-13!129;UBERON:0004185!1.10e-13!129;UBERON:0004119!1.51e-13!169;UBERON:0000925!1.51e-13!169;UBERON:0006595!1.51e-13!169;UBERON:0000464!1.28e-12!104;UBERON:0005911!5.06e-10!82;UBERON:0005177!6.97e-10!107;UBERON:0000077!6.88e-09!130;UBERON:0002553!1.08e-08!70;UBERON:0005409!2.04e-08!35;UBERON:0000160!8.80e-08!27;UBERON:0005153!1.55e-07!37;UBERON:0003135!1.67e-07!11;UBERON:0000058!1.69e-07!26;UBERON:0003886!1.75e-07!63;UBERON:0003101!2.76e-07!22;UBERON:0000079!2.76e-07!22;UBERON:0001041!5.00e-07!98;UBERON:0009569!7.15e-07!113;UBERON:0000473!9.04e-07!8 | |ontology_enrichment_uberon=UBERON:0001007!6.31e-16!155;UBERON:0001555!6.31e-16!155;UBERON:0007026!6.31e-16!155;UBERON:0000466!4.75e-14!126;UBERON:0004921!1.10e-13!129;UBERON:0004185!1.10e-13!129;UBERON:0004119!1.51e-13!169;UBERON:0000925!1.51e-13!169;UBERON:0006595!1.51e-13!169;UBERON:0000464!1.28e-12!104;UBERON:0005911!5.06e-10!82;UBERON:0005177!6.97e-10!107;UBERON:0000077!6.88e-09!130;UBERON:0002553!1.08e-08!70;UBERON:0005409!2.04e-08!35;UBERON:0000160!8.80e-08!27;UBERON:0005153!1.55e-07!37;UBERON:0003135!1.67e-07!11;UBERON:0000058!1.69e-07!26;UBERON:0003886!1.75e-07!63;UBERON:0003101!2.76e-07!22;UBERON:0000079!2.76e-07!22;UBERON:0001041!5.00e-07!98;UBERON:0009569!7.15e-07!113;UBERON:0000473!9.04e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.26e-14;22!UBERON:0000160;6.92e-14;17!UBERON:0002108;3.84e-12;4!UBERON:0003135;6.78e-12;11!UBERON:0004921;9.98e-11;33!UBERON:0000473;6.65e-10;8!UBERON:0003101;2.34e-08;22!UBERON:0000079;2.34e-08;22!UBERON:0000058;1.26e-07;10!UBERON:0002114;1.66e-07;2!UBERON:0000922;2.62e-07;49!UBERON:0006947;3.86e-07;3!UBERON:0004054;3.86e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.25e-14,17;UBERON:0005409,1.43e-12,25;UBERON:0002108,4.19e-12,4;UBERON:0003135,1.12e-11,11;UBERON:0000473,9.59e-10,8;UBERON:0004921,1.54e-09,118;UBERON:0003101,3.03e-08,22;UBERON:0000079,3.03e-08,22;UBERON:0001007,6.93e-08,145;UBERON:0001555,6.93e-08,145;UBERON:0007026,6.93e-08,145;UBERON:0002114,1.81e-07,2;UBERON:0006947,4.32e-07,3;UBERON:0004054,4.32e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.286804595389004,2.07355300420312,1.85541675650079,1.85910308591229,3.00617059544574,1.26160425437814,3.6497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,5.16551441881077,0,0,0,0.703702806881416,0.0925884451585296,0,0,1.44331342025273,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0.16798212819886,0.425325291727159,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.85586422345544,0,1.56537681191024,0,0,0,0.451199612907412,1.23224539367064,0,1.46139224653261,0.844413031143006,0,0,0.431831832204279,0,0,0,0.764628819135115,3.3243040357149,0.223874754722178,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,2.921597462471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.11709188898084,0,0,0,0,0,0.593929361665277,0.614321404198464,0,0,0,0,1.47787785689595,0.597743964753209,0.276283915531148,2.01546198283421,0,0,0,0.988551862620595,2.32727527078292,0,0.197286811273867,0,0,0,0,1.99613798001194,1.82299432759663,0.437299999980979,0,1.82069517256799,6.10208760702639,2.6002644994473,0,0,0,0,0.241192877250816,0,0,0,0,0,0.139423744278603,0.153900517007594,0,0.23056390438806,2.06442582142476,5.4323685961004,0,0.183195186803725,0.533034776018635,0,0,0,0,0.392125068635479,0.167821586975843,0.189753732724185,0,2.53197677433632,3.91758739581955,2.96841450011276,0,4.97630965539252,1.41532103205343,7.33236173920351,0,0.123563938946503,0,0.067401132980677,0,0,0,1.56531695145672,0,1.57833761139756,4.83962864194656,0.30607276163049,0,0.150323419414493,0.103688191397247,0,0,0,0,1.99226682220855,0,18.2237725251887,0.293977192243133,0.261177619741208,1.22308667769421,0,0,0,0,0,0,0.451961481561065,0,0,0.0633107959558787,5.27988733383968,0.320635281006135,0.85381197895741,0.19980960958213,6.19588793762656,0,1.88754497648161,0.432164393964449,0.124252535565433,1.41416420770077,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0.717873024576814,2.79550600698588,0,0,0,0,2.32991899054908,1.3393140992228,0.824158583811665,1.41547442093788,0.196854963029498,0,0,0,2.73280352390533,1.78801267576404,10.8014487887588,0.899895566206002,0.77380195455795,0.0607495566580247,0,0.945668487590378,0.472091293214983,0.105600336519406,0,0.383830394638891,0,0,0,0,0,0,0,0.492555124496034,0,0,0,0,0.129282956361551,0,0,0,0.320362237703084,0.314408610199332,1.65695622138878,0,0,0,0,0,0,0,0,0.628216385000937,0,0.122026264901963,0.1251909307065,0,0,0,0,0,0,0,0,1.87333962322753,1.59413131471908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0.132864840313363,0.327130788511688,0,0.245772908753719,0.633936370075881,0,0.213383459388282,0,0,0,0.139879507719444,1.24415452006595,0,0,0,0,0,0,0,0,0,0,3.20228299314188,0,0,0,0,0,0,0.252071696221718,0,0,0,0.588886311006154,0.589848616738702,0.550285795565037,1.38630799380406,0,0,0,0.150420656698515,0,4.68908406739856,1.04762677792569,0,1.6264169483875,0,0,0,0,0,2.19303106742873,0,0,5.74930924378179,0,0,4.24875922965642,2.04895972216168,0,0,0,0,0,0.709163045303809,0.778619813244484,0.39246546425257,0.157115589916002,1.12108865325516,0,0,0.47775168788705,0,0,0,0,0,0,0,0,0.860454717640555,0,0,2.54032230114557,2.7492824225286,0,0,12.3040974977572,1.96300467230486,1.21917924982269,0,0,0,0,4.2109103423179,7.56012945613199,0.594600453887843,2.2589216407792,0,5.73658805553359,4.63044948647668,13.9878118722533,23.5158648180761,0.245148321753905,2.12108892391463,0,0,0,0,0,0,0.0999411559249289,0.535661815816973,0.705789743431384,0.561689566824178,0,0.917458566809082,0,0,0,1.30905207102113,12.1676173318542,0,0,0,0,0.218531143927391,0.380095503034311,2.34574308406558,2.13773924212448,1.10273879441814,5.51556586443225,0.151557396436479,1.33982065078089,0.829169439458779,0,0.426467963801962,1.66645102024618,0,0.0620747142958579,0.112131862580613,0.954707374172474,5.2550469129137,0.217716747896961,0.342233301085281,0,0.143444410785353,2.32862249582209,0.976839223331694,0,0,2.24563005266467,2.34640942403454,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.286804595389004,2.07355300420312,1.85541675650079,1.85910308591229,3.00617059544574,1.26160425437814,3.6497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,5.16551441881077,0,0,0,0.703702806881416,0.0925884451585296,0,0,1.44331342025273,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0.16798212819886,0.425325291727159,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.85586422345544,0,1.56537681191024,0,0,0,0.451199612907412,1.23224539367064,0,1.46139224653261,0.844413031143006,0,0,0.431831832204279,0,0,0,0.764628819135115,3.3243040357149,0.223874754722178,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,2.921597462471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.11709188898084,0,0,0,0,0,0.593929361665277,0.614321404198464,0,0,0,0,1.47787785689595,0.597743964753209,0.276283915531148,2.01546198283421,0,0,0,0.988551862620595,2.32727527078292,0,0.197286811273867,0,0,0,0,1.99613798001194,1.82299432759663,0.437299999980979,0,1.82069517256799,6.10208760702639,2.6002644994473,0,0,0,0,0.241192877250816,0,0,0,0,0,0.139423744278603,0.153900517007594,0,0.23056390438806,2.06442582142476,5.4323685961004,0,0.183195186803725,0.533034776018635,0,0,0,0,0.392125068635479,0.167821586975843,0.189753732724185,0,2.53197677433632,3.91758739581955,2.96841450011276,0,4.97630965539252,1.41532103205343,7.33236173920351,0,0.123563938946503,0,0.067401132980677,0,0,0,1.56531695145672,0,1.57833761139756,4.83962864194656,0.30607276163049,0,0.150323419414493,0.103688191397247,0,0,0,0,1.99226682220855,0,18.2237725251887,0.293977192243133,0.261177619741208,1.22308667769421,0,0,0,0,0,0,0.451961481561065,0,0,0.0633107959558787,5.27988733383968,0.320635281006135,0.85381197895741,0.19980960958213,6.19588793762656,0,1.88754497648161,0.432164393964449,0.124252535565433,1.41416420770077,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0.717873024576814,2.79550600698588,0,0,0,0,2.32991899054908,1.3393140992228,0.824158583811665,1.41547442093788,0.196854963029498,0,0,0,2.73280352390533,1.78801267576404,10.8014487887588,0.899895566206002,0.77380195455795,0.0607495566580247,0,0.945668487590378,0.472091293214983,0.105600336519406,0,0.383830394638891,0,0,0,0,0,0,0,0.492555124496034,0,0,0,0,0.129282956361551,0,0,0,0.320362237703084,0.314408610199332,1.65695622138878,0,0,0,0,0,0,0,0,0.628216385000937,0,0.122026264901963,0.1251909307065,0,0,0,0,0,0,0,0,1.87333962322753,1.59413131471908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0.132864840313363,0.327130788511688,0,0.245772908753719,0.633936370075881,0,0.213383459388282,0,0,0,0.139879507719444,1.24415452006595,0,0,0,0,0,0,0,0,0,0,3.20228299314188,0,0,0,0,0,0,0.252071696221718,0,0,0,0.588886311006154,0.589848616738702,0.550285795565037,1.38630799380406,0,0,0,0.150420656698515,0,4.68908406739856,1.04762677792569,0,1.6264169483875,0,0,0,0,0,2.19303106742873,0,0,5.74930924378179,0,0,4.24875922965642,2.04895972216168,0,0,0,0,0,0.709163045303809,0.778619813244484,0.39246546425257,0.157115589916002,1.12108865325516,0,0,0.47775168788705,0,0,0,0,0,0,0,0,0.860454717640555,0,0,2.54032230114557,2.7492824225286,0,0,12.3040974977572,1.96300467230486,1.21917924982269,0,0,0,0,4.2109103423179,7.56012945613199,0.594600453887843,2.2589216407792,0,5.73658805553359,4.63044948647668,13.9878118722533,23.5158648180761,0.245148321753905,2.12108892391463,0,0,0,0,0,0,0.0999411559249289,0.535661815816973,0.705789743431384,0.561689566824178,0,0.917458566809082,0,0,0,1.30905207102113,12.1676173318542,0,0,0,0,0.218531143927391,0.380095503034311,2.34574308406558,2.13773924212448,1.10273879441814,5.51556586443225,0.151557396436479,1.33982065078089,0.829169439458779,0,0.426467963801962,1.66645102024618,0,0.0620747142958579,0.112131862580613,0.954707374172474,5.2550469129137,0.217716747896961,0.342233301085281,0,0.143444410785353,2.32862249582209,0.976839223331694,0,0,2.24563005266467,2.34640942403454,0,0,0,0,0 | ||
|short_description=p5@EPCAM | |short_description=p5@EPCAM | ||
}} | }} |
Latest revision as of 12:15, 17 September 2015
Short description: | p5@EPCAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_EPCAM_5end |
Coexpression cluster: | C1908_smallcell_endometrioid_small_colon_temporal_iPS_duodenum |
Association with transcript: | 151bp_to_ENST00000490733_5end |
EntrezGene: | EPCAM |
HGNC: | 11529 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.10e-14 | 253 |
germ line cell | 1.16e-11 | 7 |
germ cell | 1.16e-11 | 7 |
embryonic stem cell | 4.54e-11 | 5 |
endodermal cell | 1.87e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
intestine | 8.25e-14 | 17 |
gastrointestinal system | 1.43e-12 | 25 |
small intestine | 4.19e-12 | 4 |
male reproductive organ | 1.12e-11 | 11 |
testis | 9.59e-10 | 8 |
subdivision of digestive tract | 1.54e-09 | 118 |
male organism | 3.03e-08 | 22 |
male reproductive system | 3.03e-08 | 22 |
digestive system | 6.93e-08 | 145 |
digestive tract | 6.93e-08 | 145 |
primitive gut | 6.93e-08 | 145 |
duodenum | 1.81e-07 | 2 |
male genital duct | 4.32e-07 | 3 |
internal male genitalia | 4.32e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.46e-27 | 106 |
cell type cancer | 1.03e-20 | 143 |
adenocarcinoma | 2.25e-15 | 25 |
cancer | 5.72e-10 | 235 |
gastrointestinal system cancer | 1.28e-09 | 14 |
disease of cellular proliferation | 1.60e-09 | 239 |