FFCP PHASE1:Hg19::chr1:31883057..31883076,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=347735 | |EntrezGene=347735 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23231 | |HGNC=23231 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000487207_5end | |association_with_transcript=0bp_to_ENST00000487207_5end | ||
|cluster_id=chr1:31883057..31883076,+ | |||
|coexpression_cluster_id=C3968 | |||
|description=CAGE_peak_7_at_SERINC2_5end | |description=CAGE_peak_7_at_SERINC2_5end | ||
|id=chr1:31883057..31883076,+ | |id=chr1:31883057..31883076,+ | ||
|ontology_enrichment_celltype=CL:0000057!5.98e-26!75;CL:0000055!4.24e-25!180;CL:0002334!3.39e-18!12;CL:0002552!3.18e-11!5;CL:0000723!4.47e-11!436;CL:0000048!5.53e-11!430;CL:0000034!1.64e-10!444;CL:0000183!2.50e-10!59;CL:0000680!1.30e-09!57;CL:0000056!1.30e-09!57;CL:0000355!1.30e-09!57;CL:0000187!2.09e-09!54;CL:0002371!3.32e-09!591;CL:0002556!8.49e-09!6;CL:0000192!3.51e-08!42;CL:0000514!3.51e-08!42;CL:0000393!5.80e-08!60;CL:0000211!5.80e-08!60;CL:0000144!6.43e-08!625;CL:0002504!2.59e-07!3;CL:1000279!2.59e-07!3;CL:1000280!2.59e-07!3;CL:0002580!4.15e-07!3;CL:0002622!4.15e-07!3;CL:0002579!6.35e-07!3 | |ontology_enrichment_celltype=CL:0000057!5.98e-26!75;CL:0000055!4.24e-25!180;CL:0002334!3.39e-18!12;CL:0002552!3.18e-11!5;CL:0000723!4.47e-11!436;CL:0000048!5.53e-11!430;CL:0000034!1.64e-10!444;CL:0000183!2.50e-10!59;CL:0000680!1.30e-09!57;CL:0000056!1.30e-09!57;CL:0000355!1.30e-09!57;CL:0000187!2.09e-09!54;CL:0002371!3.32e-09!591;CL:0002556!8.49e-09!6;CL:0000192!3.51e-08!42;CL:0000514!3.51e-08!42;CL:0000393!5.80e-08!60;CL:0000211!5.80e-08!60;CL:0000144!6.43e-08!625;CL:0002504!2.59e-07!3;CL:1000279!2.59e-07!3;CL:1000280!2.59e-07!3;CL:0002580!4.15e-07!3;CL:0002622!4.15e-07!3;CL:0002579!6.35e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002552;4.91e-22;5!CL:0002504;1.26e-13;3!CL:1000279;1.26e-13;3!CL:0002580;1.26e-13;3!CL:1000280;1.26e-13;3!CL:0002622;1.26e-13;3!CL:0002334;9.16e-13;12!CL:0002561;1.24e-10;2!CL:0002554;5.87e-10;2!CL:0002556;1.28e-07;6!CL:0000057;2.74e-07;73!CL:0002579;9.05e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002552,3.25e-22,5;CL:0000057,1.16e-16,76;CL:0002504,7.33e-14,3;CL:1000279,7.33e-14,3;CL:1000280,7.33e-14,3;CL:0002580,2.00e-13,3;CL:0002622,2.00e-13,3;CL:0002334,1.46e-12,12;CL:0002561,1.22e-10,2;CL:0002554,3.83e-10,2;CL:0002556,1.21e-07,6;CL:0000048,9.26e-07,427 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.11e-12!95;UBERON:0000914!4.22e-10!83;UBERON:0002329!4.22e-10!83;UBERON:0003077!4.22e-10!83;UBERON:0003059!4.22e-10!83;UBERON:0007282!4.22e-10!83;UBERON:0009618!4.22e-10!83;UBERON:0007285!4.22e-10!83;UBERON:0001758!8.49e-09!6;UBERON:0003672!8.49e-09!6;UBERON:0003688!1.09e-08!6;UBERON:0002358!1.09e-08!6;UBERON:0003684!1.09e-08!6;UBERON:0001178!1.09e-08!6;UBERON:0001134!1.24e-08!61;UBERON:0002036!1.24e-08!61;UBERON:0003082!1.24e-08!61;UBERON:0002385!3.41e-08!63;UBERON:0001015!3.41e-08!63;UBERON:0000383!3.41e-08!63;UBERON:0004290!8.24e-08!70;UBERON:0000165!7.05e-07!28;UBERON:0000930!7.05e-07!28;UBERON:0001828!8.66e-07!8 | |ontology_enrichment_uberon=UBERON:0003102!1.11e-12!95;UBERON:0000914!4.22e-10!83;UBERON:0002329!4.22e-10!83;UBERON:0003077!4.22e-10!83;UBERON:0003059!4.22e-10!83;UBERON:0007282!4.22e-10!83;UBERON:0009618!4.22e-10!83;UBERON:0007285!4.22e-10!83;UBERON:0001758!8.49e-09!6;UBERON:0003672!8.49e-09!6;UBERON:0003688!1.09e-08!6;UBERON:0002358!1.09e-08!6;UBERON:0003684!1.09e-08!6;UBERON:0001178!1.09e-08!6;UBERON:0001134!1.24e-08!61;UBERON:0002036!1.24e-08!61;UBERON:0003082!1.24e-08!61;UBERON:0002385!3.41e-08!63;UBERON:0001015!3.41e-08!63;UBERON:0000383!3.41e-08!63;UBERON:0004290!8.24e-08!70;UBERON:0000165!7.05e-07!28;UBERON:0000930!7.05e-07!28;UBERON:0001828!8.66e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0001828;1.09e-13;8!UBERON:0003688;1.06e-11;6!UBERON:0002358;1.06e-11;6!UBERON:0003684;1.06e-11;6!UBERON:0001178;1.06e-11;6!UBERON:0005406;1.19e-10;2!UBERON:0005933;1.24e-10;2!UBERON:0005942;1.24e-10;2!UBERON:0005932;1.24e-10;2!UBERON:0000165;4.29e-09;28!UBERON:0003729;2.58e-08;13!UBERON:0004457;7.87e-08;9!UBERON:0000042;7.87e-08;9!UBERON:0001758;1.28e-07;6!UBERON:0003672;1.28e-07;6!UBERON:0000344;1.99e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001828,8.49e-14,8;UBERON:0003688,1.49e-11,6;UBERON:0002358,1.49e-11,6;UBERON:0003684,1.49e-11,6;UBERON:0001178,1.49e-11,6;UBERON:0005406,1.16e-10,2;UBERON:0005933,1.22e-10,2;UBERON:0005942,1.22e-10,2;UBERON:0005932,1.22e-10,2;UBERON:0003102,1.71e-10,99;UBERON:0000165,8.58e-09,29;UBERON:0000930,8.58e-09,29;UBERON:0003729,2.22e-08,13;UBERON:0000161,2.74e-08,36;UBERON:0001758,1.21e-07,6;UBERON:0003672,1.21e-07,6;UBERON:0000344,1.76e-07,20;UBERON:0004923,4.69e-07,66 | |||
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| ||
|short_description=p7@SERINC2 | |short_description=p7@SERINC2 | ||
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Latest revision as of 13:11, 17 September 2015
Short description: | p7@SERINC2 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SERINC2_5end |
Coexpression cluster: | C3968_Fibroblast_Adipocyte_Hair_Pericytes_Preadipocyte_Skeletal_Prostate |
Association with transcript: | 0bp_to_ENST00000487207_5end |
EntrezGene: | SERINC2 |
HGNC: | 23231 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of gingiva | 3.25e-22 | 5 |
fibroblast | 1.16e-16 | 76 |
enteric smooth muscle cell | 7.33e-14 | 3 |
smooth muscle cell of large intestine | 7.33e-14 | 3 |
smooth muscle cell of colon | 7.33e-14 | 3 |
preadipocyte of the breast | 2.00e-13 | 3 |
prostate stromal cell | 2.00e-13 | 3 |
preadipocyte | 1.46e-12 | 12 |
outer root sheath cell | 1.22e-10 | 2 |
fibroblast of lymphatic vessel | 3.83e-10 | 2 |
fibroblast of periodontium | 1.21e-07 | 6 |
multi fate stem cell | 9.26e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
gingiva | 8.49e-14 | 8 |
omentum | 1.49e-11 | 6 |
peritoneum | 1.49e-11 | 6 |
abdominal cavity | 1.49e-11 | 6 |
visceral peritoneum | 1.49e-11 | 6 |
perirenal fat | 1.16e-10 | 2 |
hair root sheath | 1.22e-10 | 2 |
hair outer root sheath | 1.22e-10 | 2 |
bulb of hair follicle | 1.22e-10 | 2 |
surface structure | 1.71e-10 | 99 |
mouth | 8.58e-09 | 29 |
stomodeum | 8.58e-09 | 29 |
mouth mucosa | 2.22e-08 | 13 |
orifice | 2.74e-08 | 36 |
periodontium | 1.21e-07 | 6 |
dentition | 1.21e-07 | 6 |
mucosa | 1.76e-07 | 20 |
organ component layer | 4.69e-07 | 66 |