FFCP PHASE1:Hg19::chr20:62611333..62611380,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=140700 | |EntrezGene=140700 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16129 | |HGNC=16129 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000478694,ENST00000498830,uc002yhn.2_5end | |association_with_transcript=0bp_to_ENST00000478694,ENST00000498830,uc002yhn.2_5end | ||
|cluster_id=chr20:62611333..62611380,- | |||
|description=CAGE_peak_3_at_SAMD10_5end | |description=CAGE_peak_3_at_SAMD10_5end | ||
|id=chr20:62611333..62611380,- | |id=chr20:62611333..62611380,- | ||
|ontology_enrichment_celltype=CL:0000542!9.24e-12!53;CL:0000051!9.24e-12!53;CL:0000838!2.51e-11!52;CL:0000988!4.24e-08!182;CL:0000084!7.32e-08!25;CL:0000827!7.32e-08!25;CL:0000037!5.33e-07!172;CL:0000566!5.33e-07!172 | |ontology_enrichment_celltype=CL:0000542!9.24e-12!53;CL:0000051!9.24e-12!53;CL:0000838!2.51e-11!52;CL:0000988!4.24e-08!182;CL:0000084!7.32e-08!25;CL:0000827!7.32e-08!25;CL:0000037!5.33e-07!172;CL:0000566!5.33e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000084;6.51e-08;25!CL:0000333;7.21e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.18e-13,177;CL:0000542,1.17e-12,53;CL:0000051,1.17e-12,53;CL:0000838,6.27e-12,52;CL:0000037,1.30e-10,168;CL:0002032,1.32e-09,161;CL:0000837,1.32e-09,161;CL:0000084,7.68e-08,25;CL:0000827,7.68e-08,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2531!1.04e-14!51;DOID:0060083!1.04e-14!51;DOID:1240!2.09e-12!39;DOID:8692!8.05e-10!31;DOID:162!3.53e-08!235;DOID:14566!1.28e-07!239;DOID:0050686!1.57e-07!137 | |ontology_enrichment_disease=DOID:2531!1.04e-14!51;DOID:0060083!1.04e-14!51;DOID:1240!2.09e-12!39;DOID:8692!8.05e-10!31;DOID:162!3.53e-08!235;DOID:14566!1.28e-07!239;DOID:0050686!1.57e-07!137 | ||
|ontology_enrichment_disease_v019=DOID:1240;2.99e-13;39!DOID:2531;3.15e-13;51!DOID:0060083;3.15e-13;51!DOID:8692;3.91e-12;31!DOID:0060058;1.69e-09;10!DOID:171;3.03e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,8.70e-22,51;DOID:0060083,8.70e-22,51;DOID:1240,2.91e-17,39;DOID:8692,1.06e-12,31;DOID:0060058,9.63e-10,10;DOID:0050686,3.92e-09,137;DOID:171,1.73e-08,10 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;7.21e-07;5!UBERON:0002410;7.21e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,3.58e-07,5;UBERON:0002410,3.58e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.09340350391728,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0.369363174230364,0,0.626909442956176,1.43117993565528,0.821246550437305,0.502170558379211,11.2327706449488,8.45636071334441,9.36658297632783,0,1.15148819429164,0.154816123316076,0,0,0,0.387336002901508,1.70603078984906,4.40400659002271,0,0.200544447470142,0.868043482863407,0.223915474239924,0,0.257575567634187,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0.112328631146495,0,0,0,0,0,0,0.546138611262131,0,0.853460445133014,0,0,0.661044872784862,0,0.569212969109448,1.76171156811282,0.382273228125229,2.64342657158052,1.12101712596307,3.95076127162616,1.96709770113833,1.17903228824749,0.822405995998037,0.334372990781356,0,0.946895611469467,0,0.222820913770347,0.294605907474837,0.221533894583621,0.541607727530031,0.25618263945135,0.390178042679635,0.822189523018381,0,0,1.63115219478266,2.1403266247177,2.09071047609954,0,0.766440987203842,0.68725489096526,1.51811815211702,0.95569624297229,1.95325036156926,0.950452044448374,1.05402583354441,1.15187950038977,0,0.473554504088034,0.821127996921047,2.01606743224732,1.60464117470104,0.868946423296794,0,0,0,0,0,0,0,0,0.661743720148475,0.221729397462564,0.790513071238134,0.196468613246569,1.82147644146271,0.370784442784429,0.324547393654683,0.696518949197069,0.664789802594326,0.715471872916026,0.571994910780128,1.85728750664782,0.39752481473341,0.860234595106124,0,0,1.25849830862972,0.550236083880135,0.417989933073621,0.516833518338658,0.71153252537342,0.33472061276467,0.805658634218294,0.760272105718513,1.22031028774085,0,0.81014194788176,0.535798369704479,0.673588117878509,0.563057402416611,0,0,0.366403487860815,0,0,0,0,0.12663051166458,0.132409180813219,0.286836620748814,0,0.560677600142307,0,0,0,0.269421344139376,0,0.151357427644931,0,0.468642863667593,0,0.570471821544449,0,0,0.323745888736263,0,0.204154171254893,0.122834317311768,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0.300091096084402,0.103052529238439,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.348581828608555,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0.236613600079688,0.337169380156203,0,0.220587945464788,0,0.474541238222193,0,0.196221465125346,0,1.4763109092493,1.40241773803446,0,0,0,0,0,4.41463099414651,0.368965315629341,0.171567810298526,0.219500570817251,0,0.100528972411631,0.740707561268237,0,0,0,1.27523445472584,0.469634776943287,1.01056513432752,2.31492756288305,2.09279567458058,0.790204397959275,0.858486162094873,0,0.234004265139238,0.594524649154913,0,0,0,0,0,0,0.492663237895943,2.81754988842323,1.24396869324463,1.00883967391873,0.6312121671319,0.317489471460845,0.381988425558278,0,0,0.411309970813294,1.20137223137567,0,0.448524337381443,0.43596006883328,0.2933531432838,0,0,0,0,0,0,1.41849132023278,0,0,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,2.10833939483032,0,0,0,0,0,0,1.45710687191585,1.18218456121156,1.94064817373566,0.513372145118994,0.508189248444927,1.30139853857622,0,2.68026024534958,0.637938751653163,0,0,0,0.24538298343828,0,0.542530047399471,0,0,0,0,0.300946099727719,0,0,0.664225598535437,0.184369168541703,0,1.56640925970192,0,0.206768026122887,0.431428401637234,0.426910231213777,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0,0.241718899183244,0,0,0,0,0.131124414959424,0,0.462092022626489,0,4.38417673959782,0.844413031143006,2.27466768141793,0.340187410553031,0.647747748306418,4.62681758070868,1.08378575017541,1.50506932156456,1.01950509218015,0.831076008928724,0.895499018888713,0,0,1.28225062558195,0.656029291399411,0.325378394664303,0.103041011647722,0,0,0,0,0,0.386682873168488,0,0,0.137836572484531,0.107420244868274,0.435050081742686,0.255679882248303,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0.511795582622668,0,0,0,0,0.274537029736055,0,0,0,0,0,0,2.11300293513511,0.272999822815972,0,0,0,0,0,0,0,0,0.6196469961995,0.563391205064483,0,0,0,0,0,0,0.75894634753143,0.349934720244983,0.0962221127255121,0,0,0.0941438007767792,0,1.68471475667626,0,0,1.01489521846434,0,0.569647187174163,1.42939065274673,0.411362273086194,1.29694662238543,0,0,0.427296284509893,0.962479855263359,0.490080431962063,1.67222857613147,0.721346064882224,0,3.18852545457645,3.5924286857907,1.7235483311913,4.44514523720154,3.57084134302011,4.7735520279288,7.75997908712854,2.82023812391442,0,3.55512733383367,4.65705417800729,2.01799707191048,0,2.06103206853459,1.84344458585075,0.671028323677248,1.66849141711908,0.586164286206121,0.556812347790485,0,2.16364542780786,0,1.4098700508785,1.12284324244932,0.73254089635947,0,11.8129987334127,1.42068073403207,0,0,0,0,0.140669416410513,0.445234820091624,3.79048910721547,0.844501632511974,0.19924798825107,0.828851746593443,0,0.409074730008619,9.35444521504128,0,0.898683511473268,0.179021174675609,1.02314474045374,0,0,0,0.969332746095218,0.371072392647405,5.98841394003583,0.520855522170466,1.31189999994294,0,0.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| ||
|short_description=p3@SAMD10 | |short_description=p3@SAMD10 | ||
}} | }} |
Latest revision as of 14:53, 17 September 2015
Short description: | p3@SAMD10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SAMD10_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000478694, ENST00000498830, uc002yhn.2_5end |
EntrezGene: | SAMD10 |
HGNC: | 16129 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.18e-13 | 177 |
lymphocyte | 1.17e-12 | 53 |
common lymphoid progenitor | 1.17e-12 | 53 |
lymphoid lineage restricted progenitor cell | 6.27e-12 | 52 |
hematopoietic stem cell | 1.30e-10 | 168 |
hematopoietic oligopotent progenitor cell | 1.32e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.32e-09 | 161 |
T cell | 7.68e-08 | 25 |
pro-T cell | 7.68e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 3.58e-07 | 5 |
autonomic nervous system | 3.58e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 8.70e-22 | 51 |
immune system cancer | 8.70e-22 | 51 |
leukemia | 2.91e-17 | 39 |
myeloid leukemia | 1.06e-12 | 31 |
lymphoma | 9.63e-10 | 10 |
organ system cancer | 3.92e-09 | 137 |
neuroectodermal tumor | 1.73e-08 | 10 |