FFCP PHASE1:Hg19::chr4:40752000..40752023,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:40752000..40752023,+ to FFCP PHASE1:Hg19::chr4:40752000..40752023,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79730 | |EntrezGene=79730 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25857 | |HGNC=25857 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=19bp_to_ENST00000473399_5end | |||
|cluster_id=chr4:40752000..40752023,+ | |||
|coexpression_cluster_id=C4412 | |||
|description=CAGE_peak_3_at_NSUN7_5end | |||
|id=chr4:40752000..40752023,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.13e-08!254 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.83e-09;5!CL:0000039;2.29e-08;7!CL:0000586;2.29e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.83e-09,5;CL:0000039,1.59e-08,7;CL:0000586,1.59e-08,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!7.66e-12!106;DOID:0050687!1.60e-09!143 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.05e-09;22!DOID:2994;3.05e-09;22!DOID:3119;7.01e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.21e-13,106;DOID:0050687,5.72e-12,143;DOID:3095,1.25e-09,22;DOID:2994,1.25e-09,22;DOID:3119,2.91e-08,14;DOID:299,7.25e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0000064!5.31e-10!219;UBERON:0000481!7.96e-10!347;UBERON:0000464!1.27e-09!104;UBERON:0007023!3.43e-09!115;UBERON:0004121!1.01e-08!169;UBERON:0000073!1.47e-08!94;UBERON:0001016!1.47e-08!94;UBERON:0003075!2.51e-08!86;UBERON:0007284!2.51e-08!86;UBERON:0000063!2.70e-08!97;UBERON:0000924!2.81e-08!173;UBERON:0006601!2.81e-08!173;UBERON:0000922!6.47e-08!612;UBERON:0000058!8.04e-08!26;UBERON:0002346!1.17e-07!90;UBERON:0000080!2.51e-07!18;UBERON:0002120!2.51e-07!18;UBERON:0004875!2.51e-07!18;UBERON:0005721!2.51e-07!18;UBERON:0005754!2.51e-07!18;UBERON:0007297!2.51e-07!18;UBERON:0000466!3.01e-07!126;UBERON:0005743!3.35e-07!86;UBERON:0000489!3.74e-07!32;UBERON:0004876!4.42e-07!20;UBERON:0003056!4.89e-07!61;UBERON:0000062!5.35e-07!511;UBERON:0000153!5.83e-07!129;UBERON:0007811!5.83e-07!129;UBERON:0003135!7.57e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.86e-14;22!UBERON:0004921;1.03e-13;33!UBERON:0000160;1.77e-12;17!UBERON:0000922;7.51e-12;49!UBERON:0003135;2.25e-08;11!UBERON:0000059;3.60e-08;11!UBERON:0004907;8.56e-08;5!UBERON:0000473;4.42e-07;8!UBERON:0001052;9.32e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.43e-12,17;UBERON:0005409,1.94e-12,25;UBERON:0003135,2.67e-08,11;UBERON:0000059,3.41e-08,11;UBERON:0004907,5.90e-08,5;UBERON:0000473,3.67e-07,8;UBERON:0001052,4.03e-07,4;UBERON:0004921,4.13e-07,118 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0,0.263766978228454,0,0.331397375727916,0,0,0,0,0.984968464614303,0.612002073732759,0.940364164434263,1.71741592278634,2.73748850145768,1.75759695432724,0,0,0,0,0,0,0,0,0.739508020333575,0,0,0.880801318004542,0,0,0,0.447830948479849,0,0.515151135268373,0,0,0,0,0.411167888021826,0,0.575384784644301,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0,0,0.329851300186716,0.199463657621632,0.426224750532694,0,0,0,1.00499466102697,0,0.217188844705117,0.605399502633369,0,0.632924774881769,0,0,0,0,0.150176892841506,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05818582500183,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.945348171640679,0.443458794925128,1.22968699970376,0.982343066232845,0,0.741568885568859,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0.17859945656816,0.22452937262617,0.337834441449967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0.468642863667593,0,0,0,0,0.323745888736263,0,0,0.245668634623536,0,0,0.494533858557114,0,0,0.168336113954066,0,0,0.438977620880838,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,4.87894824518382,5.4337205011809,3.60201222895507,2.48786532036889,4.54177531576131,1.45990943630332,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.09080345523293,0,0.219500570817251,0,0.201057944823262,0.648119116109707,0.325808305310325,0,1.44331342025273,0.695582429850461,0.70445216541493,0,0,0,1.58040879591855,2.57545848628462,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,1.14861935834114,0,0,0,0,0,0,0,0,0.508189248444927,1.30139853857622,0,0.335032530668698,0,0.749007023947182,0,0.414415513436035,0,0,0,0,0,0,0.234282829985426,0,0,0,0,0.184369168541703,0,0,0,0,0.215714200818617,0,0,0,0.604780586659361,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,1.32945394550784,0,0.184161977871793,0,0,0,0.451199612907412,0.616122696835318,2.35304930753057,2.92278449306521,1.26661954671451,1.13733384070897,0.340187410553031,0.215915916102139,0,0.812839312631559,3.51182841698397,0.509752546090077,1.66215201785745,1.56712328305525,0,0,1.28225062558195,0.656029291399411,2.92840555197873,0.412164046590889,0,0,0,0,0,0.676695028044854,0,0,0.137836572484531,0.214840489736547,0.145016693914229,0.170453254832202,0.0890320356467374,0.165284915360978,0,0,0.30347334256665,0,0,0,0,0.532306030317022,0,0,0,0,0.316379424718726,0,0.255897791311334,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,1.46290121726877,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.430234056612155,0,0,0,0,0,0.75894634753143,1.39973888097993,0.48111056362756,0,0,0.188287601553558,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.320472213382419,0,1.47024129588619,0,0.144269212976445,0.142283686696828,0,0,0,0,1.94773164164733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593929361665277,0,0.994147647766298,0.422008249231538,0.333926115068718,0,2.11125408127993,2.78947183551498,1.10513566212459,9.06957892275394,0,0,0,1.25815691606258,0.179021174675609,0,0.690503839458535,0,0,0,0.463840490809256,0,2.3438498497671,1.92411999991631,2.17499872630438,0.910347586283997,5.08507300585533,2.12748913591143,0,0,1.90987494426621,0,0.723578631752448,0,0.221158519862449,0,0,0,0,0.692552326534174,0,0,1.52587995496613,3.47671590150426,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.816164040795739,2.40300221437699,1.73110911793673,3.98104772431402,1.23840590304675,3.05515072466813,0,0,0,0.471807930864739,0,0.234264445725339,1.27718352450966,0.391329237864179,0,1.18375320854817,1.20990716048664,1.53036380815245,0.252746318513952,0,0,0,0,0,0,3.69992409838731,0,0.694238953340524,0.391969589657511,0,2.27144668714639,0.343972064943233,0,0,0,0.290967049465258,0,0.90392296312213,0,0,0.0633107959558787,2.54216797555244,0,0.426905989478705,1.9980960958213,3.16998917739033,0,1.54435498075768,0.720273989940749,1.24252535565433,0.235694034616795,0.135904206073614,0.104602846312333,0,0,0,0,3.83239764200917,0.429765441419957,0,1.95497680890578,0.916641696046735,0,0.399358000997982,0,0,1.00775208730089,0,0,0,0,0.0674035438541849,0,0,0,0.136203406111576,4.82259445395058,6.87697182986169,4.56984371832104,0,0,0,0,1.10327990218877,2.6751839948849,0.316801009558219,0,0.767660789277781,2.85878130549347,0,0,0,0,0,0,0.246277562248017,0,1.47305718976163,0.146552233678082,1.32506888912221,0.517131825446202,0.26446520348538,0.171086837884329,2.11444506695002,1.49502377594773,2.35806457649499,1.24271716604159,1.48849806543585,0,0,0.638341257770182,0,0.2506898940227,0,0,1.72759505875258,0.886068179966986,0,0,1.14681839138014,0.221858103073705,0.310482014706917,1.24513771442608,0,0,0,0,1.40500471742064,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450772826991655,0.761610424337591,0,0,0.107410557042488,0,0,0,0,0,0,0,0.857766365499703,4.175908671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| ||
|short_description=p3@NSUN7 | |||
}} | }} |
Latest revision as of 18:55, 17 September 2015
Short description: | p3@NSUN7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NSUN7_5end |
Coexpression cluster: | C4412_argyrophil_rectum_testis_testicular_iPS_choriocarcinoma_small |
Association with transcript: | 19bp_to_ENST00000473399_5end |
EntrezGene: | NSUN7 |
HGNC: | 25857 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.83e-09 | 5 |
germ line cell | 1.59e-08 | 7 |
germ cell | 1.59e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.43e-12 | 17 |
gastrointestinal system | 1.94e-12 | 25 |
male reproductive organ | 2.67e-08 | 11 |
large intestine | 3.41e-08 | 11 |
lower digestive tract | 5.90e-08 | 5 |
testis | 3.67e-07 | 8 |
rectum | 4.03e-07 | 4 |
subdivision of digestive tract | 4.13e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.21e-13 | 106 |
cell type cancer | 5.72e-12 | 143 |
germ cell and embryonal cancer | 1.25e-09 | 22 |
germ cell cancer | 1.25e-09 | 22 |
gastrointestinal system cancer | 2.91e-08 | 14 |
adenocarcinoma | 7.25e-07 | 25 |