FFCP PHASE1:Hg19::chr2:5832493..5832507,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:5832493..5832507,+ to FFCP PHASE1:Hg19::chr2:5832493..5832507,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6664 | |EntrezGene=6664 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11191 | |HGNC=11191 | ||
|TSSclassifier=strong | |||
|UniProt=P35716 | |UniProt=P35716 | ||
|association_with_transcript=-291bp_to_ENST00000322002,NM_003108,uc002qyj.2_5end | |||
|cluster_id=chr2:5832493..5832507,+ | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_2_at_SOX11_5end | |||
|id=chr2:5832493..5832507,+ | |||
|ontology_enrichment_celltype=CL:0000133!3.37e-20!59;CL:0002319!7.88e-18!25;CL:0000221!2.00e-15!71;CL:0000333!6.53e-15!41;CL:0000055!5.22e-13!180;CL:0000095!8.25e-11!17;CL:0000123!8.25e-11!17;CL:0000243!3.22e-09!15;CL:0000125!3.22e-09!15;CL:0000030!3.22e-09!15;CL:0000339!3.22e-09!15;CL:0000047!6.09e-09!8;CL:0000147!1.62e-08!14;CL:0000540!4.02e-07!6;CL:0000031!4.02e-07!6;CL:0000404!4.02e-07!6;CL:1000507!5.37e-07!12;CL:1000494!5.37e-07!12;CL:0000128!8.94e-07!7;CL:0000126!8.94e-07!7;CL:0000127!8.94e-07!7;CL:0002453!8.94e-07!7;CL:1000449!9.61e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002319;4.57e-24;25!CL:0002321;4.51e-14;15!CL:0000095;5.69e-13;17!CL:0000540;8.87e-11;6!CL:0000404;8.87e-11;6!CL:0000243;1.63e-10;15!CL:0000125;1.63e-10;15!CL:0002322;4.25e-09;5!CL:0000333;4.32e-09;5!CL:0000128;3.78e-08;7!CL:0000126;3.78e-08;7!CL:0000127;3.78e-08;7!CL:0000147;1.22e-07;14!CL:0000188;6.00e-07;9!CL:0000075;6.58e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,3.19e-28,59;CL:0002319,3.21e-24,25;CL:0000221,4.96e-21,72;CL:0000333,6.45e-18,41;CL:0000047,7.95e-14,8;CL:0000095,4.41e-13,17;CL:0000123,4.41e-13,17;CL:0000540,8.23e-11,6;CL:0000031,8.23e-11,6;CL:0000404,8.23e-11,6;CL:0000243,1.27e-10,15;CL:0000125,1.27e-10,15;CL:0000030,1.27e-10,15;CL:0000339,1.27e-10,15;CL:0002322,4.20e-09,5;CL:0000128,3.70e-08,7;CL:0000126,3.70e-08,7;CL:0000127,3.70e-08,7;CL:0002453,3.70e-08,7;CL:0000147,1.36e-07,14;CL:0000075,6.41e-07,27;CL:0000188,8.14e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000133;1.50e-13;59!CL:0000031;8.87e-11;6!CL:0000339;1.63e-10;15!CL:0000221;4.53e-08;72 | |||
|ontology_enrichment_disease=DOID:171!5.05e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:171;1.36e-12;10!DOID:169;1.90e-07;6!DOID:3095;9.49e-07;22!DOID:2994;9.49e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,9.98e-13,10;DOID:169,1.96e-07,6;DOID:3095,7.96e-07,22;DOID:2994,7.96e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!5.53e-28!94;UBERON:0001016!5.53e-28!94;UBERON:0005743!1.43e-25!86;UBERON:0001017!2.26e-23!82;UBERON:0000924!3.44e-23!173;UBERON:0006601!3.44e-23!173;UBERON:0004121!7.20e-21!169;UBERON:0002346!3.27e-17!90;UBERON:0000955!7.69e-17!69;UBERON:0006238!7.69e-17!69;UBERON:0003075!8.26e-15!86;UBERON:0007284!8.26e-15!86;UBERON:0000033!1.83e-14!123;UBERON:0000153!7.18e-14!129;UBERON:0007811!7.18e-14!129;UBERON:0003056!6.23e-13!61;UBERON:0001049!1.85e-12!57;UBERON:0005068!1.85e-12!57;UBERON:0006241!1.85e-12!57;UBERON:0007135!1.85e-12!57;UBERON:0002616!2.63e-12!59;UBERON:0000475!6.83e-12!365;UBERON:0000481!5.26e-10!347;UBERON:0000119!1.16e-09!312;UBERON:0000922!4.20e-09!612;UBERON:0000064!7.10e-09!219;UBERON:0000483!8.04e-09!309;UBERON:0002780!1.44e-08!41;UBERON:0001890!1.44e-08!41;UBERON:0006240!1.44e-08!41;UBERON:0000468!1.57e-08!659;UBERON:0003080!3.69e-08!42;UBERON:0002020!7.64e-08!34;UBERON:0003528!7.64e-08!34;UBERON:0001893!9.43e-08!34;UBERON:0002791!1.38e-07!33;UBERON:0001869!4.89e-07!32;UBERON:0009773!5.37e-07!12;UBERON:0001231!5.37e-07!12;UBERON:0004810!5.37e-07!12;UBERON:0002050!6.88e-07!605;UBERON:0005423!6.88e-07!605;UBERON:0004211!9.61e-07!16;UBERON:0001285!9.61e-07!16;UBERON:0007684!9.61e-07!16;UBERON:0003220!9.61e-07!16;UBERON:0004208!9.61e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;5.30e-10;49!UBERON:0000013;4.32e-09;5!UBERON:0002410;4.32e-09;5!UBERON:0007625;4.43e-08;11!UBERON:0002050;5.60e-08;5!UBERON:0005423;5.60e-08;5!UBERON:0002346;7.82e-07;4!UBERON:0000923;7.82e-07;4!UBERON:0010316;7.82e-07;4!UBERON:0005291;7.82e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.34e-17,171;UBERON:0000924,2.34e-17,171;UBERON:0006601,2.34e-17,171;UBERON:0001016,1.15e-14,89;UBERON:0001017,9.49e-12,81;UBERON:0000013,4.48e-09,5;UBERON:0002410,4.48e-09,5;UBERON:0002346,3.82e-08,86;UBERON:0007625,4.18e-08,11;UBERON:0000922,2.06e-07,592 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.982935746006035,2.79120467188971,0.655324116390517,2.37390280405608,0.618831764800233,0.331397375727916,0.672325146451775,0.602694528023977,0,0,3.93987385845721,2.65200898617529,3.13454721478088,9.15955158819382,8.6230887795917,7.65810101528297,0,0,0,0,0,1.70297735647684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0.973269740605272,3.78139268656271,4.65631734671384,5.35792192728069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,0,0,0,0,0,0,1.68203280042692,1.06748995729705,0.24666754841716,0.311211035399766,0,0.653847612453835,0.908144565869588,1.15235184896,0.468642863667593,0,0,0,1.52664848236894,1.61872944368132,0.842704840213491,0,2.21101771161182,0,0,0,0,0,1.68336113954066,2.62748891731125,0,0,0,0,0.113432183160021,0.538168907066586,0.640672166455702,0.211931901159562,0.300091096084402,0.309157587715317,0,0,0.337552664482532,0.0974370051611986,0.504867548488229,0.276149695926898,0,0.710019185033229,0.201504196455281,0.847802961552438,0,0,0,8.53815942907168,8.48190517257506,9.76029120103954,11.19539394166,8.83122978064699,12.0442528495024,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.8231480226628,2.94017422771084,0,0,0,0,0,0.857839051492628,0,0,0,0.555530670951178,0.651616610620649,0,0,3.94163376915261,2.46558257895225,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0.383382679165211,0,0,0,0,0,1.39695367442772,1.52795370223311,0,6.84289784090821,0.411309970813294,0.300343057843917,0.857479297891735,1.45770409648969,1.74384027533312,1.83345714552375,0.775630294546667,0,0,0,0,1.28603687131071,4.25547396069835,1.8649552531127,0.142977993658148,1.08524321078289,0,0,0.355391948742546,1.58390374586686,0.602878754119172,0,0.099972991182057,0,0,0,0.958499421966331,1.14861935834114,2.85273810081437,0.579125226670317,1.02738161275192,0.537182889719687,0,0,0,0,7.87693335089637,27.3293693101006,101.300834473878,71.3619290324326,109.725465284344,0,0,0,0.36807447515742,1.50051156317903,1.62759014219841,0,0,0,0,0.902838299183157,0,2.0694614258501,0,3.13427586520895,0.0868836144680828,1.56640925970192,4.46086450954113,0,0,0,1.5156378572313,0,1.81434175997808,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,3.60959690325929,3.31165949548983,0,2.92278449306521,4.43316841350078,0,0.680374821106063,1.94324324491925,0,1.35473218771926,2.00675909541941,0.509752546090077,0.831076008928724,2.68649705666614,0,0,3.59030175162945,2.29610251989794,5.53143270929315,0,0,0,0,0,0,2.80345083047154,1.07834031980251,0.614014698904518,2.20538515975249,0.537101224341368,1.30515024522806,2.30111894023472,3.91740956845644,0,0,0,0,0,0,0,0,0,0,0,0,1.86079184679834,1.2655176988749,0,1.79128453917934,1.28381696410176,0,0,0.899362287916574,0.54907405947211,1.7671860351853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0.202910376962704,0.6196469961995,0.281695602532241,1.86434757865267,0.589494246078727,0.35667105148125,0,0.211107635297664,0,0.75894634753143,1.74967360122491,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22963810150862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3252310079324,0,0,0,0,0,0,0.95497793895076,3.26661148915902,1.53580351049616,0,0.422008249231538,0,0,0,0.19924798825107,0,0,0.715880777515084,0,0,0,0,0,0,0,0,0,0.278304294485554,55.8918634403344,0,0,0,0,0,0,5.8606373451049,1.45802306691627,0,0,0.361789315876224,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,1.07841812769083,0,0.468528891450678,0,0,0,0,0,119.674449797522,0,0.751617097072463,0.933193722575224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0.19871461170299,0.189932387867636,0.586654148204409,0,0,0.19980960958213,0,0,0.343189995723929,0,0,0,1.63085047288337,1.98745407993433,0.509991088181609,1.44475294950759,1.20084057741958,0.273810757783986,0,0,0,0,0,0,0,0,0.446342914883745,1.2764859772478,0,0,0,0,0,0,0,0,0.408610218334727,5.94786649320571,8.66498450562573,7.89336642255452,0,0,0.182248669974074,0,0,1.57363764404994,0,0,0,0.714695326373367,0.662091970365432,0,0.542999601753713,0,0,0,0,0,0,0,0,1.0342636508924,0.39669780522807,0,0,0,0.471612915298998,0,0,0,0,0,0,0.2506898940227,0,0,0,0.886068179966986,0.244052529803926,0.500763722825999,1.14681839138014,0.221858103073705,0.558867626472451,4.70385358783185,3.12451019905266,0,0,0,3.27834434064817,15.6514710899691,0.149254802886874,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0.380805212168795,0.406870733204662,0,0,0,0,3.20022211730523,0,0,0,0,4.71771501024837,2.08795433572169,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,5.59869534029676,16.1146907842601,5.60689019262745,6.13337173237996,9.50123852270521,6.28010360829893,10.2035961648808,5.7010451559141,13.407478031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| ||
|short_description=p2@SOX11 | |||
}} | }} |
Latest revision as of 19:12, 17 September 2015
Short description: | p2@SOX11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SOX11_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -291bp_to_ENST00000322002, NM_003108, uc002qyj.2_5end |
EntrezGene: | SOX11 |
HGNC: | 11191 |
UniProt: | P35716 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 3.19e-28 | 59 |
neural cell | 3.21e-24 | 25 |
ectodermal cell | 4.96e-21 | 72 |
migratory neural crest cell | 6.45e-18 | 41 |
neuronal stem cell | 7.95e-14 | 8 |
neuron associated cell | 4.41e-13 | 17 |
neuron associated cell (sensu Vertebrata) | 4.41e-13 | 17 |
neuron | 8.23e-11 | 6 |
neuroblast | 8.23e-11 | 6 |
electrically signaling cell | 8.23e-11 | 6 |
glial cell (sensu Vertebrata) | 1.27e-10 | 15 |
glial cell | 1.27e-10 | 15 |
glioblast | 1.27e-10 | 15 |
glioblast (sensu Vertebrata) | 1.27e-10 | 15 |
embryonic stem cell | 4.20e-09 | 5 |
oligodendrocyte | 3.70e-08 | 7 |
macroglial cell | 3.70e-08 | 7 |
astrocyte | 3.70e-08 | 7 |
oligodendrocyte precursor cell | 3.70e-08 | 7 |
pigment cell | 1.36e-07 | 14 |
columnar/cuboidal epithelial cell | 6.41e-07 | 27 |
cell of skeletal muscle | 8.14e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.34e-17 | 171 |
ectoderm | 2.34e-17 | 171 |
presumptive ectoderm | 2.34e-17 | 171 |
nervous system | 1.15e-14 | 89 |
central nervous system | 9.49e-12 | 81 |
sympathetic nervous system | 4.48e-09 | 5 |
autonomic nervous system | 4.48e-09 | 5 |
neurectoderm | 3.82e-08 | 86 |
pigment epithelium of eye | 4.18e-08 | 11 |
embryo | 2.06e-07 | 592 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 9.98e-13 | 10 |
neuroendocrine tumor | 1.96e-07 | 6 |
germ cell and embryonal cancer | 7.96e-07 | 22 |
germ cell cancer | 7.96e-07 | 22 |