FFCP PHASE1:Hg19::chr11:36589547..36589570,+: Difference between revisions
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|id=chr11:36589547..36589570,+
|short_description=p1@RAG1
|description=CAGE_peak_1_at_RAG1_5end
|association_with_transcript=0bp_to_NM_000448,uc001mwu.3_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5896 | |EntrezGene=5896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9831 | |HGNC=9831 | ||
|TSSclassifier=strong | |||
|UniProt=P15918 | |UniProt=P15918 | ||
|association_with_transcript=0bp_to_NM_000448,uc001mwu.3_5end | |||
|cluster_id=chr11:36589547..36589570,+ | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_1_at_RAG1_5end | |||
|id=chr11:36589547..36589570,+ | |||
|ontology_enrichment_celltype=CL:0000817!1.87e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000817;1.06e-11;1!CL:0000037;2.82e-11;1!CL:0001024;2.82e-11;1!CL:0002032;3.82e-11;1!CL:0000557;3.82e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0001024,2.68e-11,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001829!1.95e-10!2;UBERON:0003408!3.82e-08!10;UBERON:0001042!4.36e-08!10;UBERON:0009145!4.36e-08!10;UBERON:0006562!2.35e-07!11;UBERON:0004177!3.27e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;9.15e-22;2!UBERON:0005058;9.15e-22;2!UBERON:0009113;9.15e-22;2!UBERON:0004177;4.40e-19;5!UBERON:0005057;4.40e-19;5!UBERON:0005795;3.82e-11;1!UBERON:0002405;2.98e-09;27!UBERON:0002390;5.36e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,8.38e-14,7;UBERON:0005057,8.38e-14,7;UBERON:0002370,2.30e-11,4;UBERON:0005058,2.30e-11,4;UBERON:0009113,2.30e-11,4;UBERON:0003295,2.30e-11,4;UBERON:0005562,2.30e-11,4;UBERON:0000974,7.09e-10,10;UBERON:0003351,7.32e-08,6 | |||
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|short_description=p1@RAG1 | |||
}} | }} |
Latest revision as of 21:39, 17 September 2015
Short description: | p1@RAG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAG1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_NM_000448, uc001mwu.3_5end |
EntrezGene: | RAG1 |
HGNC: | 9831 |
UniProt: | P15918 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD34-positive, CD38-negative hematopoietic stem cell | 2.68e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 8.38e-14 | 7 |
immune organ | 8.38e-14 | 7 |
thymus | 2.30e-11 | 4 |
hemolymphoid system gland | 2.30e-11 | 4 |
thymic region | 2.30e-11 | 4 |
pharyngeal gland | 2.30e-11 | 4 |
thymus primordium | 2.30e-11 | 4 |
neck | 7.09e-10 | 10 |
pharyngeal epithelium | 7.32e-08 | 6 |