FFCP PHASE1:Hg19::chr7:27212501..27212513,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3206 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5100 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000519593,ENST00000521421_5end | |||
|cluster_id=chr7:27212501..27212513,- | |||
|description=CAGE_peak_5_at_HOXA10_5end | |||
|id=chr7:27212501..27212513,- | |||
|ontology_enrichment_celltype=CL:0002620!3.57e-13!23;CL:0000499!1.03e-07!27;CL:0002540!2.26e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002540;3.46e-14;6!CL:0002092;9.12e-13;10!CL:0000650;3.15e-11;2!CL:1000500;3.15e-11;2!CL:1000618;3.15e-11;2!CL:1001318;3.15e-11;2!CL:0002173;3.15e-11;2!CL:0002620;7.75e-10;23!CL:0002564;1.63e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002540,2.28e-14,6;CL:0002092,5.17e-13,10;CL:0000650,5.26e-11,2;CL:1000500,5.26e-11,2;CL:1000618,5.26e-11,2;CL:1001318,5.26e-11,2;CL:0002173,5.26e-11,2;CL:0002620,8.18e-10,23;CL:0002564,2.27e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;1.88e-09;5!DOID:450;1.88e-09;5!DOID:66;1.88e-09;5!DOID:423;1.88e-09;5!DOID:0080000;1.88e-09;5!DOID:11722;1.88e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.92e-09,5;DOID:450,1.92e-09,5;DOID:66,1.92e-09,5;DOID:423,1.92e-09,5;DOID:0080000,1.92e-09,5;DOID:11722,1.92e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0001008!1.06e-10!45;UBERON:0006554!6.48e-10!44;UBERON:0003064!3.24e-08!37;UBERON:0002199!7.86e-08!45;UBERON:0002416!7.86e-08!45;UBERON:0000162!2.72e-07!14;UBERON:0001353!2.72e-07!14;UBERON:0000163!2.72e-07!14;UBERON:0006866!2.72e-07!14;UBERON:0000164!2.72e-07!14;UBERON:0000931!2.72e-07!14;UBERON:0002113!6.84e-07!27;UBERON:0003918!6.84e-07!27;UBERON:0005095!6.84e-07!27;UBERON:0007687!6.84e-07!27;UBERON:0002384!8.62e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002371;7.16e-15;12!UBERON:0004765;3.25e-14;26!UBERON:0003567;3.15e-11;2!UBERON:0003838;3.15e-11;2!UBERON:0003586;3.15e-11;2!UBERON:0005169;3.15e-11;2!UBERON:0002321;3.15e-11;2!UBERON:0005215;3.15e-11;2!UBERON:0002303;3.15e-11;2!UBERON:0002319;3.15e-11;2!UBERON:0001474;1.03e-09;18!UBERON:0011135;1.88e-09;5!UBERON:0002216;1.88e-09;5!UBERON:0011134;1.88e-09;5!UBERON:0002209;1.88e-09;5!UBERON:0002213;1.88e-09;5!UBERON:0007844;1.88e-09;5!UBERON:0011138;1.88e-09;5!UBERON:0001130;1.88e-09;5!UBERON:0001066;1.88e-09;5!UBERON:0001468;1.88e-09;5!UBERON:0001434;1.59e-07;36!UBERON:0002242;1.63e-07;3!UBERON:0006834;9.27e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003567,5.26e-11,2;UBERON:0003838,5.26e-11,2;UBERON:0003586,5.26e-11,2;UBERON:0005169,5.26e-11,2;UBERON:0002321,5.26e-11,2;UBERON:0005215,5.26e-11,2;UBERON:0002303,5.26e-11,2;UBERON:0002319,5.26e-11,2;UBERON:0011135,1.75e-09,5;UBERON:0002216,1.75e-09,5;UBERON:0011134,1.75e-09,5;UBERON:0002209,1.75e-09,5;UBERON:0002213,1.75e-09,5;UBERON:0005856,1.75e-09,5;UBERON:0005866,1.75e-09,5;UBERON:0005863,1.75e-09,5;UBERON:0007844,1.75e-09,5;UBERON:0011138,1.75e-09,5;UBERON:0001130,1.75e-09,5;UBERON:0001066,1.75e-09,5;UBERON:0001468,1.75e-09,5;UBERON:0002242,2.27e-07,3;UBERON:0003068,2.27e-07,3;UBERON:0002328,2.27e-07,3;UBERON:0004880,2.27e-07,3;UBERON:0006834,9.30e-07,1 | |||
|phase1_expression=0.181678379270557,0,0,1.0007329835313,0,0,0,0.631719873426831,0,0,0,0,0,0.74259811776028,1.98838425436749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53007406669196,0.50133791063589,1.73815822752988,0.795285947051099,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0.117434498643765,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,1.97328599257748,0,1.05965950579781,0.900273288253207,1.13357782162283,1.28820270022815,0.558350568994769,0.337552664482532,0.68205903612839,0.504867548488229,1.56484827691909,0,2.13005755509969,2.31729825923573,0.847802961552438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.337169380156203,0.241011029883482,0.220587945464788,0,0.237270619111097,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,1.59562869950922,1.04007436911366,2.82928111688356,0,3.99633268524149,0,0.542621605391443,0,0.325736184293735,0,0,0,1.74306691720059,0,0,0,0,0,0,0,0,0.61642896765115,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59498939234882,1.00034104211935,0.271265023699736,0,0,0,0,1.50473049863859,4.5481500811197,0,0.664225598535437,0.368738337083406,0.60818530127658,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0.308419387605311,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0,0,0.574072240823034,1.27463817604702,0.393373244878272,0,0.15403067420883,0,0,0,0,0,0.215915916102139,0,2.43851793789468,1.00337954770971,0.509752546090077,1.66215201785745,0.671624264166535,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0.429680979473094,0.290033387828457,0.255679882248303,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0.117812402345686,0,0,0,0,0,0,1.09199929126389,0.848432591722276,0,0,0,0,0,0,0,0,0,0,0.392996164052485,0,0,0.844430541190656,0.987884678879706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0.399158742865633,0.766021480529467,0,0,0,0.228234679033192,0,0,0.169291777801603,0,0,0,0,0.307240764308458,0.223676107892416,0.166849141711909,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.295930216910801,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0.10893846351899,0,2.00070672109872,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450970258243478,3.00695755052017,0,0,0,0,0.569219092059585,0,0,0,0,0.17472666824203,0.343972064943233,0,0.146178634172371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.15425236441684,9.51885901442232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,1.62609223218494,0,0,0,0,0,0,0.542999601753713,0.864221491201268,1.63293680054705,0,0,0.851940108927109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0.2506898940227,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0,0.149254802886874,0,0,2.27283606330107,1.76097531226803,0.889811221596536,0,0,0,0,0,0,0,0,0,0.521745061811734,0.300515217994437,0.380805212168795,0,0,0,0,0.796191777397232,1.20008329398946,1.03018711554838,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736423801007363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90691047733584,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0.889851215136553,1.33438257845874,0,0,0,0.215927591218621,0,0,0,0.116241425368125,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.821302454849976,0,0,0,0.596852325484105,0,0.33883824611688,0,0,0,0,0,0,0,0,0,0,0.849635573439084,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0.462175628631418,0.865253124247578,0,0,0,0,0,0,0,0.378893491091197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,3.05603610457166,2.44137706989443,0.665756774185513,0,0 | |||
|short_description=p5@HOXA10 | |||
}} |
Latest revision as of 01:52, 18 September 2015
Short description: | p5@HOXA10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HOXA10_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000519593, ENST00000521421_5end |
EntrezGene: | HOXA10 |
HGNC: | 5100 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of the bone marrow | 2.28e-14 | 6 |
bone marrow cell | 5.17e-13 | 10 |
mesangial cell | 5.26e-11 | 2 |
kidney interstitial cell | 5.26e-11 | 2 |
juxtaglomerular complex cell | 5.26e-11 | 2 |
renal interstitial pericyte | 5.26e-11 | 2 |
extraglomerular mesangial cell | 5.26e-11 | 2 |
skin fibroblast | 8.18e-10 | 23 |
nucleus pulposus cell of intervertebral disc | 2.27e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
abdomen connective tissue | 5.26e-11 | 2 |
abdominal segment connective tissue | 5.26e-11 | 2 |
trunk connective tissue | 5.26e-11 | 2 |
interstitial tissue | 5.26e-11 | 2 |
extraglomerular mesangium | 5.26e-11 | 2 |
kidney interstitium | 5.26e-11 | 2 |
juxtaglomerular apparatus | 5.26e-11 | 2 |
mesangium | 5.26e-11 | 2 |
intervertebral cartilage | 1.75e-09 | 5 |
symphysis | 1.75e-09 | 5 |
nonsynovial joint | 1.75e-09 | 5 |
fibrous joint | 1.75e-09 | 5 |
cartilaginous joint | 1.75e-09 | 5 |
developing mesenchymal condensation | 1.75e-09 | 5 |
pre-cartilage condensation | 1.75e-09 | 5 |
cartilaginous condensation | 1.75e-09 | 5 |
cartilage element | 1.75e-09 | 5 |
post-cranial axial skeletal system | 1.75e-09 | 5 |
vertebral column | 1.75e-09 | 5 |
intervertebral disk | 1.75e-09 | 5 |
intervertebral joint | 1.75e-09 | 5 |
nucleus pulposus | 2.27e-07 | 3 |
axial mesoderm | 2.27e-07 | 3 |
notochord | 2.27e-07 | 3 |
chordamesoderm | 2.27e-07 | 3 |
uterus or analog | 9.30e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.92e-09 | 5 |
myotonic disease | 1.92e-09 | 5 |
muscle tissue disease | 1.92e-09 | 5 |
myopathy | 1.92e-09 | 5 |
muscular disease | 1.92e-09 | 5 |
myotonic dystrophy | 1.92e-09 | 5 |