FFCP PHASE1:Hg19::chr1:44401579..44401643,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9048 | |EntrezGene=9048 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=727 | |HGNC=727 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-10bp_to_uc001ckw.2_5end | |association_with_transcript=-10bp_to_uc001ckw.2_5end | ||
|cluster_id=chr1:44401579..44401643,+ | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_2_at_ARTN_5end | |description=CAGE_peak_2_at_ARTN_5end | ||
|id=chr1:44401579..44401643,+ | |id=chr1:44401579..44401643,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.29e-19!254;CL:0002076!5.65e-15!43;CL:0002159!2.10e-14!13;CL:0000223!4.36e-12!59;CL:0002368!9.25e-10!13;CL:0002077!4.40e-09!33;CL:0000240!2.43e-08!6;CL:0000311!2.43e-08!6;CL:0000079!2.43e-08!6;CL:0000237!2.43e-08!6;CL:0000036!2.43e-08!6;CL:0000357!2.43e-08!6;CL:0000114!2.43e-08!6;CL:0000362!2.60e-08!8;CL:0000312!3.51e-07!5 | |ontology_enrichment_celltype=CL:0000066!6.29e-19!254;CL:0002076!5.65e-15!43;CL:0002159!2.10e-14!13;CL:0000223!4.36e-12!59;CL:0002368!9.25e-10!13;CL:0002077!4.40e-09!33;CL:0000240!2.43e-08!6;CL:0000311!2.43e-08!6;CL:0000079!2.43e-08!6;CL:0000237!2.43e-08!6;CL:0000036!2.43e-08!6;CL:0000357!2.43e-08!6;CL:0000114!2.43e-08!6;CL:0000362!2.60e-08!8;CL:0000312!3.51e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.57e-18;42!CL:0002368;1.71e-16;13!CL:0002159;4.40e-16;14!CL:0000244;3.98e-10;4!CL:0000731;3.98e-10;4!CL:0002202;1.29e-09;9!CL:0002632;1.29e-09;9!CL:0002077;2.86e-09;34!CL:0002328;2.70e-08;3!CL:0000307;2.73e-08;3!CL:0002621;5.02e-08;3!CL:0002166;1.47e-07;3!CL:0000240;5.47e-07;6!CL:0000311;5.47e-07;6!CL:0000079;5.47e-07;6!CL:0000237;5.47e-07;6!CL:0000362;5.61e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.15e-29,253;CL:0002076,2.87e-23,42;CL:0000223,1.64e-16,58;CL:0002368,1.85e-16,13;CL:0002159,3.93e-16,14;CL:0002077,1.48e-10,34;CL:0000244,4.49e-10,4;CL:0000731,4.49e-10,4;CL:0002202,1.37e-09,9;CL:0002632,1.37e-09,9;CL:0000068,2.83e-08,3;CL:0000069,2.83e-08,3;CL:0002328,2.83e-08,3;CL:0000307,2.83e-08,3;CL:0000377,2.83e-08,3;CL:0002621,5.09e-08,3;CL:0002166,1.27e-07,3;CL:0000240,5.08e-07,6;CL:0000311,5.08e-07,6;CL:0000079,5.08e-07,6;CL:0000237,5.08e-07,6;CL:0000036,5.08e-07,6;CL:0000357,5.08e-07,6;CL:0000114,5.08e-07,6;CL:0000362,5.55e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;2.22e-09;58!CL:0000377;2.73e-08;3!CL:0000357;5.47e-07;6!CL:0000114;5.47e-07;6 | |||
|ontology_enrichment_disease=DOID:305!4.19e-07!106;DOID:299!7.26e-07!25 | |ontology_enrichment_disease=DOID:305!4.19e-07!106;DOID:299!7.26e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:299;3.20e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:299,2.56e-08,25;DOID:305,1.75e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.25e-12!115;UBERON:0000466!1.85e-09!126;UBERON:0000464!2.21e-09!104;UBERON:0004119!6.93e-09!169;UBERON:0000925!6.93e-09!169;UBERON:0006595!6.93e-09!169;UBERON:0006554!2.43e-08!44;UBERON:0004121!4.61e-08!169;UBERON:0001008!5.11e-08!45;UBERON:0000924!5.16e-08!173;UBERON:0006601!5.16e-08!173;UBERON:0001049!6.99e-08!57;UBERON:0005068!6.99e-08!57;UBERON:0006241!6.99e-08!57;UBERON:0007135!6.99e-08!57;UBERON:0002020!7.89e-08!34;UBERON:0003528!7.89e-08!34;UBERON:0000475!8.04e-08!365;UBERON:0001869!8.69e-08!32;UBERON:0000922!1.27e-07!612;UBERON:0000033!1.35e-07!123;UBERON:0000064!1.69e-07!219;UBERON:0000365!1.98e-07!5;UBERON:0000468!2.50e-07!659;UBERON:0000153!2.87e-07!129;UBERON:0007811!2.87e-07!129;UBERON:0003135!3.34e-07!11;UBERON:0000062!4.07e-07!511;UBERON:0001893!4.60e-07!34;UBERON:0002553!8.03e-07!70;UBERON:0002616!9.37e-07!59 | |ontology_enrichment_uberon=UBERON:0007023!1.25e-12!115;UBERON:0000466!1.85e-09!126;UBERON:0000464!2.21e-09!104;UBERON:0004119!6.93e-09!169;UBERON:0000925!6.93e-09!169;UBERON:0006595!6.93e-09!169;UBERON:0006554!2.43e-08!44;UBERON:0004121!4.61e-08!169;UBERON:0001008!5.11e-08!45;UBERON:0000924!5.16e-08!173;UBERON:0006601!5.16e-08!173;UBERON:0001049!6.99e-08!57;UBERON:0005068!6.99e-08!57;UBERON:0006241!6.99e-08!57;UBERON:0007135!6.99e-08!57;UBERON:0002020!7.89e-08!34;UBERON:0003528!7.89e-08!34;UBERON:0000475!8.04e-08!365;UBERON:0001869!8.69e-08!32;UBERON:0000922!1.27e-07!612;UBERON:0000033!1.35e-07!123;UBERON:0000064!1.69e-07!219;UBERON:0000365!1.98e-07!5;UBERON:0000468!2.50e-07!659;UBERON:0000153!2.87e-07!129;UBERON:0007811!2.87e-07!129;UBERON:0003135!3.34e-07!11;UBERON:0000062!4.07e-07!511;UBERON:0001893!4.60e-07!34;UBERON:0002553!8.03e-07!70;UBERON:0002616!9.37e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.05e-11;5!UBERON:0000486;1.79e-11;12!UBERON:0005910;1.13e-09;6!UBERON:0004815;2.70e-08;3!UBERON:0002031;2.70e-08;3!UBERON:0006554;4.59e-08;30!UBERON:0001008;4.59e-08;30!UBERON:0001949;5.02e-08;3!UBERON:0002110;3.51e-07;3!UBERON:0007196;5.33e-07;15!UBERON:0001558;5.33e-07;15!UBERON:0005911;7.87e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.42e-11,5;UBERON:0005910,1.45e-09,6;UBERON:0004119,5.42e-09,160;UBERON:0000925,5.42e-09,160;UBERON:0006595,5.42e-09,160;UBERON:0004815,2.83e-08,3;UBERON:0002031,2.83e-08,3;UBERON:0001949,5.09e-08,3;UBERON:0002110,3.29e-07,3;UBERON:0006242,3.29e-07,3;UBERON:0006554,3.74e-07,47;UBERON:0001004,4.98e-07,74;UBERON:0007196,5.61e-07,15;UBERON:0001558,5.61e-07,15;UBERON:0001008,6.22e-07,48 | |||
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| ||
|short_description=p2@ARTN | |short_description=p2@ARTN | ||
}} | }} |
Latest revision as of 05:26, 18 September 2015
Short description: | p2@ARTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ARTN_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | -10bp_to_uc001ckw.2_5end |
EntrezGene: | ARTN |
HGNC: | 727 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.15e-29 | 253 |
endo-epithelial cell | 2.87e-23 | 42 |
endodermal cell | 1.64e-16 | 58 |
respiratory epithelial cell | 1.85e-16 | 13 |
general ecto-epithelial cell | 3.93e-16 | 14 |
ecto-epithelial cell | 1.48e-10 | 34 |
transitional epithelial cell | 4.49e-10 | 4 |
urothelial cell | 4.49e-10 | 4 |
epithelial cell of tracheobronchial tree | 1.37e-09 | 9 |
epithelial cell of lower respiratory tract | 1.37e-09 | 9 |
duct epithelial cell | 2.83e-08 | 3 |
branched duct epithelial cell | 2.83e-08 | 3 |
bronchial epithelial cell | 2.83e-08 | 3 |
tracheal epithelial cell | 2.83e-08 | 3 |
tracheoblast | 2.83e-08 | 3 |
gingival epithelial cell | 5.09e-08 | 3 |
epithelial cell of Malassez | 1.27e-07 | 3 |
stratified squamous epithelial cell | 5.08e-07 | 6 |
keratin accumulating cell | 5.08e-07 | 6 |
stratified epithelial cell | 5.08e-07 | 6 |
keratinizing barrier epithelial cell | 5.08e-07 | 6 |
epithelial fate stem cell | 5.08e-07 | 6 |
stratified epithelial stem cell | 5.08e-07 | 6 |
surface ectodermal cell | 5.08e-07 | 6 |
epidermal cell | 5.55e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
urothelium | 1.42e-11 | 5 |
transitional epithelium | 1.45e-09 | 6 |
endoderm-derived structure | 5.42e-09 | 160 |
endoderm | 5.42e-09 | 160 |
presumptive endoderm | 5.42e-09 | 160 |
lower respiratory tract epithelium | 2.83e-08 | 3 |
epithelium of bronchus | 2.83e-08 | 3 |
gingival epithelium | 5.09e-08 | 3 |
gallbladder | 3.29e-07 | 3 |
gall bladder primordium | 3.29e-07 | 3 |
urinary system structure | 3.74e-07 | 47 |
respiratory system | 4.98e-07 | 74 |
tracheobronchial tree | 5.61e-07 | 15 |
lower respiratory tract | 5.61e-07 | 15 |
renal system | 6.22e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 2.56e-08 | 25 |
carcinoma | 1.75e-07 | 106 |