FFCP PHASE1:Hg19::chr1:162602328..162602360,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4921 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2731 | |||
|TSSclassifier=strong | |||
|UniProt=Q16832 | |||
|association_with_transcript=68bp_to_ENST00000367921_5end | |||
|cluster_id=chr1:162602328..162602360,+ | |||
|coexpression_cluster_id=C3895 | |||
|description=CAGE_peak_3_at_DDR2_5end | |||
|id=chr1:162602328..162602360,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.06e-30!180;CL:0000057!2.65e-19!75;CL:0000136!8.67e-11!15;CL:0000680!6.97e-10!57;CL:0000056!6.97e-10!57;CL:0000355!6.97e-10!57;CL:0002620!1.32e-09!23;CL:0000187!3.18e-09!54;CL:0000393!4.14e-07!60;CL:0000211!4.14e-07!60;CL:0000183!4.17e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000136;8.32e-11;13!CL:0002620;1.87e-10;23!CL:0000057;2.56e-07;73!CL:0000153;4.54e-07;9!CL:0000447;4.54e-07;9!CL:0000499;5.35e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.87e-18,76;CL:0000136,3.14e-12,15;CL:0002620,1.71e-10,23;CL:0000680,3.19e-08,58;CL:0000056,3.19e-08,58;CL:0000355,3.19e-08,58;CL:0000187,1.59e-07,55;CL:0000153,4.77e-07,9;CL:0000447,4.77e-07,9;CL:0000499,6.66e-07,28 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.96e-14!83;UBERON:0002329!6.96e-14!83;UBERON:0003077!6.96e-14!83;UBERON:0003059!6.96e-14!83;UBERON:0007282!6.96e-14!83;UBERON:0009618!6.96e-14!83;UBERON:0007285!6.96e-14!83;UBERON:0004290!1.76e-12!70;UBERON:0000475!1.99e-12!365;UBERON:0002385!2.90e-11!63;UBERON:0001015!2.90e-11!63;UBERON:0000383!2.90e-11!63;UBERON:0001134!9.10e-11!61;UBERON:0002036!9.10e-11!61;UBERON:0003082!9.10e-11!61;UBERON:0000486!1.35e-09!82;UBERON:0007023!1.96e-09!115;UBERON:0002199!4.85e-09!45;UBERON:0002416!4.85e-09!45;UBERON:0003102!8.36e-09!95;UBERON:0001013!6.80e-08!14;UBERON:0002097!1.38e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;5.56e-09;14!UBERON:0002385;2.76e-08;31!UBERON:0001015;2.76e-08;31!UBERON:0000383;2.76e-08;31!UBERON:0002384;5.19e-08;198!UBERON:0004457;3.47e-07;9!UBERON:0000042;3.47e-07;9!UBERON:0002199;4.40e-07;46!UBERON:0002416;4.40e-07;46!UBERON:0002097;6.09e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,7.13e-11,73;UBERON:0002329,9.77e-11,71;UBERON:0003059,9.77e-11,71;UBERON:0007282,9.77e-11,71;UBERON:0004290,9.77e-11,71;UBERON:0009618,9.77e-11,71;UBERON:0002199,1.71e-10,46;UBERON:0002416,1.71e-10,46;UBERON:0003077,2.32e-10,72;UBERON:0007285,2.32e-10,72;UBERON:0002385,1.07e-09,64;UBERON:0001015,1.07e-09,64;UBERON:0000383,1.07e-09,64;UBERON:0001134,3.61e-09,62;UBERON:0002036,3.61e-09,62;UBERON:0003082,3.61e-09,62;UBERON:0001013,6.93e-09,14;UBERON:0000486,8.17e-09,83;UBERON:0002097,8.23e-09,41;UBERON:0003102,1.39e-08,99;UBERON:0007503,2.30e-08,78 | |||
|phase1_expression=15.6243406172679,21.1959518652073,28.0499264150983,5.00366491765652,16.0905993993824,9.59572376510406,5.06599756336621,6.31719873426831,15.4099520637905,0,0,0,0,8.29234564832312,10.2733186475654,1.34465029290355,2.41077811209591,1.46062018077475,3.90346239032406,0.492484232307152,0.612002073732759,0.940364164434263,0.572471974262113,0.136874425072884,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0.534880391567015,0,2.43806866313962,1.34140171940727,8.31106651982947,7.59022220007589,16.5441510509844,15.643424047769,6.36228757640879,13.1391414981712,0.567208902984407,0.443458794925128,0.087834785693126,1.11332214173056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0.367663080345869,0,0.357198913136319,0,0.112611480483322,0,0,0.183201743930407,0,0,0,9.44246708221105,7.47120018821021,19.0669220371035,29.8310085578766,4.25602058638028,6.16745360156538,1.06748995729705,2.96001058100592,3.7345324247972,2.96363478553314,0.653847612453835,0.908144565869588,1.72852777344,2.10889288650417,1.87296046098192,1.1409436430889,2.83952493048422,1.52664848236894,1.29498355494505,0.421352420106746,4.28723759635276,0.859840221182376,8.57603983758853,22.572054288359,27.9411630084769,0,0.718618141816238,0.336672227908132,1.00094815897571,3.3247693858102,11.4134181429018,17.1633165647451,20.7328521291104,0.680593098960126,18.1183532045751,29.4709196569623,22.6767134240731,8.40255069036326,18.6525077921574,21.1265242837416,11.7253619488902,14.5147645727489,15.5899208257918,17.4179304228439,33.9664125990085,20.6906952728079,20.5905563659636,8.66468044757706,2.54340888465731,0,0,0,0,0,0.116193942869518,0,0,0,17.2094485562798,7.71889125831462,4.14404764057442,25.0758681137269,24.5439023767659,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0.590789906681404,0,0,1.20097467208968,0,0,0,0.185176890317059,0.977424915930974,2.07986957055916,0,0.231860809950154,2.34817388471643,0,0,0,0,0,0,0,0,0,0,0,0.447792613514241,0,0,0,0,0,0.144119953416961,0.37872730027914,0.063497894292169,0.381988425558278,0,1.71072446022705,0.616964956219941,0.901029173531752,0.571652865261156,1.45770409648969,0.87192013766656,1.0267360014933,4.39523833576444,7.15312891703765,2.535908257668,9.0418959638856,2.08014873822732,0.257207374262142,0,0.266422179016099,3.86040582876998,2.71310802695722,1.64648067356154,2.28015329005615,2.13235169245527,0.791951872933429,2.71295439353627,2.61460037580088,4.09889263846434,0,0,0,5.99062138728957,11.4861935834114,1.42636905040718,2.02693829334611,3.6985738059069,2.68591444859843,0,0,0,0,0.508189248444927,0,0.773288812777695,0,0,0,0,0,13.9868300559819,1.50051156317903,2.71265023699736,27.0362119990049,16.2370379805417,19.397397049174,16.9855051739434,12.0378439891088,6.82222512167955,10.3473071292505,1.32845119707087,1.84369168541703,7.73264168765937,0,0,0,0,0,0,0,0.604780586659361,15.8788997004017,38.0585693754395,17.1202657604175,23.577603463049,20.4682899626681,7.39928037260594,10.3892646511494,1.54209693802656,2.13074070375753,1.64254312027618,1.55776328755086,1.16210378459959,0,0,0,8.38145471601629,5.28064387219479,8.1297137274843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30151357865721,3.19427136107939,0.640986253728404,0.330037999682352,0,0,17.6752322828576,5.22021878777459,1.84858340537573,3.68408819342711,1.65403886981437,9.3455613035398,9.71611849225331,2.21589231281862,4.27353771104339,0,0,0,0.10115778085555,0,16.3702420351933,2.7881490806424,1.84820148105653,0.532306030317022,2.60979897622522,1.66791797193528,0.858749320451947,2.97726695487734,2.84741482246853,7.43457756302917,0.255897791311334,11.9822916649498,3.5002357271853,1.56989728039846,6.65528093058265,3.84351841630477,5.1837457032102,0.808729926293264,1.58510321173008,0.421258456238981,0.48763373908959,0.974853958525138,2.11300293513511,7.78049495025519,7.91870418940791,2.26016233240486,1.10273068709225,1.32687795048244,0.876901770507525,0,3.27947376023316,1.42037263873893,0.92947049429925,0.281695602532241,1.86434757865267,9.23540985523339,1.07001315444375,1.41904425628239,25.5440238710174,20.4162833635139,0.75894634753143,0.699869440489966,0,0,0,3.67160823029439,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.6713239776324,0,0,0,0.23874448473769,0,0,0,2.53204949538923,6.12197877625982,0,0,7.77067154179172,1.10513566212459,0,0.613612095012929,0,9.33118762985422,0,0,0,7.00368180022229,0,0,0,1.02044907978036,0,0,0,21.024987687609,0,0,0,0,0.874813840149763,1.73624994933292,0,0.844175070377856,0,1.99042667876204,0.295547618953547,1.53569778007781,4.35753854075961,0,5.92516990479237,6.83652335082007,0.922255617552241,0.538545866458633,0,0.31900115973192,1.37396390102793,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,5.2189963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| |||
|short_description=p3@DDR2 | |||
}} |
Latest revision as of 07:31, 18 September 2015
Short description: | p3@DDR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DDR2_5end |
Coexpression cluster: | C3895_mature_Preadipocyte_extraskeletal_Fibroblast_adipose_Adipocyte_Olfactory |
Association with transcript: | 68bp_to_ENST00000367921_5end |
EntrezGene: | DDR2 |
HGNC: | 2731 |
UniProt: | Q16832 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.87e-18 | 76 |
fat cell | 3.14e-12 | 15 |
skin fibroblast | 1.71e-10 | 23 |
muscle precursor cell | 3.19e-08 | 58 |
myoblast | 3.19e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.19e-08 | 58 |
muscle cell | 1.59e-07 | 55 |
GAG secreting cell | 4.77e-07 | 9 |
carbohydrate secreting cell | 4.77e-07 | 9 |
stromal cell | 6.66e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 7.13e-11 | 73 |
somite | 9.77e-11 | 71 |
presomitic mesoderm | 9.77e-11 | 71 |
presumptive segmental plate | 9.77e-11 | 71 |
dermomyotome | 9.77e-11 | 71 |
trunk paraxial mesoderm | 9.77e-11 | 71 |
integument | 1.71e-10 | 46 |
integumental system | 1.71e-10 | 46 |
paraxial mesoderm | 2.32e-10 | 72 |
presumptive paraxial mesoderm | 2.32e-10 | 72 |
muscle tissue | 1.07e-09 | 64 |
musculature | 1.07e-09 | 64 |
musculature of body | 1.07e-09 | 64 |
skeletal muscle tissue | 3.61e-09 | 62 |
striated muscle tissue | 3.61e-09 | 62 |
myotome | 3.61e-09 | 62 |
adipose tissue | 6.93e-09 | 14 |
multilaminar epithelium | 8.17e-09 | 83 |
skin of body | 8.23e-09 | 41 |
surface structure | 1.39e-08 | 99 |
epithelial vesicle | 2.30e-08 | 78 |