FFCP PHASE2:Hg19::chr1:46768929..46768940,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:10489 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:16917 |TSScla...") |
No edit summary |
||
Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=10489 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=16917 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=B5MD92 | ||
|association_with_transcript=5bp_to_ENST00000254454,ENST00000498402_5end | |association_with_transcript=5bp_to_ENST00000254454,ENST00000498402_5end | ||
|cluster_id=chr1:46768929..46768940,- | |cluster_id=chr1:46768929..46768940,- |
Latest revision as of 08:50, 18 September 2015
Short description: | p4@LRRC41 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LRRC41_5end |
Coexpression cluster: | NA |
Association with transcript: | 5bp_to_ENST00000254454, ENST00000498402_5end |
EntrezGene: | LRRC41 |
HGNC: | 16917 |
UniProt: | B5MD92 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p4@LRRC41 |
---|
0
5
10
15
20
25
30
35
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.46e-24 | 250 |
mesodermal cell | 1.49e-16 | 121 |
electrically responsive cell | 1.24e-11 | 61 |
electrically active cell | 1.24e-11 | 61 |
muscle precursor cell | 2.42e-11 | 58 |
myoblast | 2.42e-11 | 58 |
multi-potent skeletal muscle stem cell | 2.42e-11 | 58 |
muscle cell | 4.33e-11 | 55 |
smooth muscle cell | 3.33e-10 | 43 |
smooth muscle myoblast | 3.33e-10 | 43 |
Showing 1 to 10 of 14 entries
Ontology term | p-value | n |
---|---|---|
epithelial tube | 4.55e-12 | 117 |
epithelial vesicle | 2.09e-11 | 78 |
skeletal muscle tissue | 3.71e-10 | 62 |
striated muscle tissue | 3.71e-10 | 62 |
myotome | 3.71e-10 | 62 |
mesenchyme | 3.85e-10 | 160 |
entire embryonic mesenchyme | 3.85e-10 | 160 |
vasculature | 1.08e-09 | 78 |
vascular system | 1.08e-09 | 78 |
multilaminar epithelium | 1.14e-09 | 83 |
Showing 1 to 10 of 44 entries