FFCP PHASE1:Hg19::chr19:43969796..43969813,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27076 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24880 | |||
|TSSclassifier=strong | |||
|UniProt=O95274,B2RBR3 | |||
|association_with_transcript=17bp_to_ENST00000244333,NM_014400,uc002owl.1,uc002owm.2_5end | |||
|cluster_id=chr19:43969796..43969813,- | |||
|coexpression_cluster_id=C665 | |||
|description=CAGE_peak_2_at_LYPD3_5end | |||
|id=chr19:43969796..43969813,- | |||
|ontology_enrichment_celltype=CL:0000860!7.07e-15!45;CL:0002057!2.97e-13!42;CL:0000066!9.87e-12!254;CL:0002009!3.54e-11!65;CL:0000557!3.80e-11!71;CL:0002194!4.98e-10!63;CL:0000576!4.98e-10!63;CL:0000040!4.98e-10!63;CL:0000559!4.98e-10!63;CL:0000766!5.53e-10!76;CL:0002076!9.69e-10!43;CL:0000839!1.01e-09!70;CL:0002368!4.16e-07!13;CL:0000223!5.54e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.25e-13;33!CL:0002057;2.25e-13;33!CL:0000244;2.87e-09;4!CL:0000731;2.87e-09;4!CL:0000473;1.34e-08;39!CL:0000234;1.34e-08;39!CL:0000349;1.69e-08;19!CL:0002368;1.58e-07;13!CL:0002159;3.11e-07;14!CL:0002577;6.91e-07;3!CL:0002202;6.92e-07;9!CL:0002632;6.92e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.41e-10,42;CL:0002057,1.41e-10,42;CL:0000244,3.12e-09,4;CL:0000731,3.12e-09,4;CL:0000473,1.19e-08,48;CL:0000234,1.19e-08,48;CL:0000349,1.41e-08,19;CL:0002076,4.12e-08,42;CL:0000066,7.57e-08,253;CL:0002368,2.16e-07,13;CL:0002009,2.32e-07,61;CL:0002159,4.28e-07,14;CL:0002577,6.48e-07,3;CL:0002202,9.66e-07,9;CL:0002632,9.66e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;2.66e-08;42 | |||
|ontology_enrichment_disease=DOID:305!4.86e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.23e-08;4!DOID:1612;1.23e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.24e-08,4;DOID:1612,1.24e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!8.48e-15!169;UBERON:0000925!8.48e-15!169;UBERON:0006595!8.48e-15!169;UBERON:0001004!5.07e-13!72;UBERON:0000062!2.42e-10!511;UBERON:0000077!1.25e-09!130;UBERON:0000161!1.74e-09!35;UBERON:0001007!2.05e-09!155;UBERON:0001555!2.05e-09!155;UBERON:0007026!2.05e-09!155;UBERON:0005631!2.06e-09!14;UBERON:0000158!2.06e-09!14;UBERON:0000468!5.23e-09!659;UBERON:0000065!6.62e-09!53;UBERON:0002371!1.59e-08!80;UBERON:0000166!2.01e-08!21;UBERON:0002390!4.87e-08!102;UBERON:0003061!4.87e-08!102;UBERON:0000926!4.89e-08!448;UBERON:0004120!4.89e-08!448;UBERON:0006603!4.89e-08!448;UBERON:0000922!8.61e-08!612;UBERON:0000072!1.15e-07!46;UBERON:0004765!1.66e-07!101;UBERON:0001434!1.66e-07!101;UBERON:0000467!2.86e-07!625;UBERON:0000480!3.50e-07!626;UBERON:0001474!3.82e-07!86;UBERON:0003124!7.16e-07!7;UBERON:0002193!8.31e-07!112;UBERON:0000165!9.32e-07!28;UBERON:0000930!9.32e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;4.76e-09;24!UBERON:0005631;8.30e-09;10!UBERON:0000158;8.30e-09;10!UBERON:0001987;2.45e-08;4!UBERON:0000365;2.31e-07;5!UBERON:0000305;3.20e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.40e-15,14;UBERON:0000158,4.40e-15,14;UBERON:0004119,1.42e-09,160;UBERON:0000925,1.42e-09,160;UBERON:0006595,1.42e-09,160;UBERON:0003124,2.02e-09,7;UBERON:0000478,4.09e-09,24;UBERON:0001987,2.20e-08,4;UBERON:0004340,2.20e-08,4;UBERON:0000305,2.32e-07,7;UBERON:0000365,2.47e-07,5;UBERON:0000161,6.12e-07,36 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,2.09340350391728,2.83973783769224,7.64924236862515,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,2.01260960310899,6.43594857135249,2.71085326900425,2.21852406100073,0,0,0,0.553995408531877,0.802177789880567,0,0,0.32389366601898,0,4.21654892460738,3.02300754951048,0.485168122375632,2.78914844286822,2.87817521615278,0.929119112685311,0.863077176966451,0.256160706529101,0.47296445977717,0.344745680736619,1.29096936716765,1.35426486594342,5.45902784673554,4.36649840092553,3.37085226667627,4.28517449319264,2.24650318953266,1.27867425159808,0.329851300186716,0,0,5.22376629531451,3.40431134814684,1.86846674698672,0.251248665256743,1.0429658368404,0,3.63239701580021,1.84138817993782,1.89877432464531,0,0,0,0.22465726229299,0.450530678524519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68152568894461,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289648807765598,2.43806866313962,0,0,0,0,0.144846518960824,0,6.32625331393427,0,0,0,0.130979075497713,8.37879163072847,9.64039551239516,0.97364218096405,0.870648686496336,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.41359888642308,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61246251376468,0,0.206651562351531,3.56400857184616,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0.300091096084402,0.206105058476878,0,0,0,0,0.252433774244115,0,0.323292113637624,0,0,0,3.67195621010264,2.18196896472668,0.860413786167011,0.121973706129595,0,0.232387885739037,0.414644220061482,0.252320850875628,0,0,1.28648187638577,0,0,0,0.118306800039844,1.01150814046861,0.482022059766964,0.772057809126758,0,0.949082476444386,0.134831308160164,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0,0,3.40225884766739,1.1240175325762,1.3068766413512,2.96283024507295,0,0,0,0,0,0,0,0,9.4824527755113,4.29243081047436,0,0,0,0.93733833986777,2.01578553838631,0.992425680696705,0.53735113621709,0,0.383382679165211,0,0,0.207328115540772,0.432359860250884,0.37872730027914,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.853820462427555,4.24378600024763,8.32177197552485,3.93107381328584,0,0,0,0,0,0.160853921143607,0,0,0,0,0.519254429183621,0,0,3.80962293576241,1.28913384510255,0,0,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,1.14853107599234,4.55042172225565,0,0,0,0.15350367472613,0,0.107420244868274,0.145016693914229,0.0852266274161009,0,1.32227932288782,0.768760269460425,0.255225424989168,1.31505115112215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,2.11688647996127,4.02181365321472,0,0.753150406214233,6.02707521739722,10.1082885400575,23.9452282909805,7.12142540641574,1.01489521846434,0.764637207142375,0,0,0.411362273086194,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.0231488364082,2.96964680832639,21.8084098490455,0,0,0.445234820091624,0,0,0,0.276283915531148,0,0,0,0,0.359473404589307,0,0,2.36744173528641,2.3948309234694,0,0,0,0,3.1251331330228,4.89775999978696,0.724999575434793,0.455173793141999,1.01701460117107,5.2005289988946,0,0,0,0,0,0,0,0,0,2.72346158797475,7.52888219104458,3.46276163267087,0,1.38338342632836,0.448788222048861,1.62971057883012,3.82801391678303,0.0915975934018623,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.978323094660449,0,0,0,0,0.063186579628488,0,0,1.32930774541437,0.330991955875499,0.941798755221676,0,0,0,0,6.17352103710579,1.30588809870604,0.34945333648406,0,1.54810130062536,0.803982487948041,0.574808199372465,21.2405946109639,0,1.12990370390266,0,0,0,1.56441106187842,4.00794101257669,0.213452994739353,0,0,0,0,0,0,6.83512700388707,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,4.79229601197579,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,2.92466059016951,3.0952078182318,0,0.670869375198532,0,0.0524545881349981,0.528001682597033,0,2.1110671705139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75296524548339,0.106787412567695,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0.705797459094515,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0.147855149989634,0,0,0,0.414706207840855,0,0,0,0,0.406870733204662,0,0.214821114084977,0,0,0,0,0,0,0.963099152036517,0,0,0.226705925512272,0,0,0,0.926404341482917,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0.184105950251841,1.95831310807222,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0.687034029507179,0.235939446695481,2.75142897782519,0,0,0,0,0.0752103283492573,0,0,0.261906694481422,0,1.33070477595341,0,0,0,0,0,0,2.48105589194647,0,0.255524855279191,0,0,0,0,2.48366636455389,0,0.171488009437418,0,0,2.36387681767936,0.556157009460346,1.41287567130925,0,2.24217730651031,0,0,0,0,0,0,0,0,0.62164849248911,0.85359238546975,5.53007729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| |||
|short_description=p2@LYPD3 | |||
}} |
Latest revision as of 11:02, 18 September 2015
Short description: | p2@LYPD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LYPD3_5end |
Coexpression cluster: | C665_amniotic_esophagus_tongue_Corneal_tonsil_salivary_Urothelial |
Association with transcript: | 17bp_to_ENST00000244333, NM_014400, uc002owl.1, uc002owm.2_5end |
EntrezGene: | LYPD3 |
HGNC: | 24880 |
UniProt: | O95274B2RBR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.41e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.41e-10 | 42 |
transitional epithelial cell | 3.12e-09 | 4 |
urothelial cell | 3.12e-09 | 4 |
defensive cell | 1.19e-08 | 48 |
phagocyte | 1.19e-08 | 48 |
extraembryonic cell | 1.41e-08 | 19 |
endo-epithelial cell | 4.12e-08 | 42 |
epithelial cell | 7.57e-08 | 253 |
respiratory epithelial cell | 2.16e-07 | 13 |
macrophage dendritic cell progenitor | 2.32e-07 | 61 |
general ecto-epithelial cell | 4.28e-07 | 14 |
placental epithelial cell | 6.48e-07 | 3 |
epithelial cell of tracheobronchial tree | 9.66e-07 | 9 |
epithelial cell of lower respiratory tract | 9.66e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.40e-15 | 14 |
membranous layer | 4.40e-15 | 14 |
endoderm-derived structure | 1.42e-09 | 160 |
endoderm | 1.42e-09 | 160 |
presumptive endoderm | 1.42e-09 | 160 |
chorion | 2.02e-09 | 7 |
extraembryonic structure | 4.09e-09 | 24 |
placenta | 2.20e-08 | 4 |
allantois | 2.20e-08 | 4 |
amnion | 2.32e-07 | 7 |
urothelium | 2.47e-07 | 5 |
orifice | 6.12e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.24e-08 | 4 |
breast cancer | 1.24e-08 | 4 |