FFCP PHASE1:Hg19::chr4:74308029..74308041,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=174 | |EntrezGene=174 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=317 | |HGNC=317 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=23bp_to_uc011cbg.1_5end | |association_with_transcript=23bp_to_uc011cbg.1_5end | ||
|cluster_id=chr4:74308029..74308041,+ | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_6_at_AFP_5end | |description=CAGE_peak_6_at_AFP_5end | ||
|id=chr4:74308029..74308041,+ | |id=chr4:74308029..74308041,+ | ||
|ontology_enrichment_celltype=CL:0002322!4.63e-27!5;CL:0000181!1.66e-25!12;CL:0000417!1.66e-25!12;CL:0000668!1.66e-25!12;CL:0000414!1.66e-25!12;CL:0000412!1.66e-25!12;CL:0000182!1.66e-25!12;CL:0000148!4.24e-14!10;CL:0000541!4.24e-14!10;CL:0000147!2.29e-10!14;CL:0002563!1.22e-09!4;CL:0000223!1.45e-09!59;CL:0000710!1.52e-07!20 | |ontology_enrichment_celltype=CL:0002322!4.63e-27!5;CL:0000181!1.66e-25!12;CL:0000417!1.66e-25!12;CL:0000668!1.66e-25!12;CL:0000414!1.66e-25!12;CL:0000412!1.66e-25!12;CL:0000182!1.66e-25!12;CL:0000148!4.24e-14!10;CL:0000541!4.24e-14!10;CL:0000147!2.29e-10!14;CL:0002563!1.22e-09!4;CL:0000223!1.45e-09!59;CL:0000710!1.52e-07!20 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.18e-37;12!CL:0002563;9.39e-14;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.11e-37,12;CL:0000223,1.72e-14,58;CL:0002563,1.00e-13,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.73e-41;11!UBERON:0009497;7.52e-35;13!UBERON:0001041;1.03e-15;30!UBERON:0003104;6.61e-15;31!CL:0000223;3.04e-10;58 | |||
|ontology_enrichment_disease=DOID:7!2.13e-08!39 | |||
|ontology_enrichment_disease_v019=DOID:7;8.23e-13;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,2.57e-12,39 | |||
|ontology_enrichment_uberon=UBERON:0002107!1.94e-16!19;UBERON:0006925!1.94e-16!19;UBERON:0008836!1.94e-16!19;UBERON:0008835!2.61e-14!22;UBERON:0003894!2.61e-14!22;UBERON:0009854!1.01e-13!23;UBERON:0007499!1.09e-12!25;UBERON:0009497!1.09e-12!25;UBERON:0000015!1.09e-12!25;UBERON:0002423!1.09e-12!25;UBERON:0006235!1.09e-12!25;UBERON:0004161!1.09e-12!25;UBERON:0005057!3.13e-12!26;UBERON:0009856!3.13e-12!26;UBERON:0003929!2.12e-10!54;UBERON:0002365!2.22e-10!31;UBERON:0002330!2.22e-10!31;UBERON:0001242!1.22e-09!4;UBERON:0001262!1.22e-09!4;UBERON:0004786!1.22e-09!4;UBERON:0004808!1.22e-09!4;UBERON:0001277!1.22e-09!4;UBERON:0002368!2.81e-09!35;UBERON:0003350!5.73e-08!5;UBERON:0000949!2.28e-07!45;UBERON:0005911!5.11e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.33e-24;19!UBERON:0006925;3.33e-24;19!UBERON:0002423;1.19e-18;25!UBERON:0002365;4.28e-14;31!UBERON:0002330;4.28e-14;31!UBERON:0001242;9.39e-14;4!UBERON:0001262;9.39e-14;4!UBERON:0004786;9.39e-14;4!UBERON:0004808;9.39e-14;4!UBERON:0001277;9.39e-14;4!UBERON:0002368;2.70e-13;33!UBERON:0000949;2.18e-10;43!UBERON:0000485;1.96e-08;7!UBERON:0003929;1.96e-08;7!UBERON:0003350;1.54e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.20e-24,19;UBERON:0006925,3.20e-24,19;UBERON:0008836,3.20e-24,19;UBERON:0008835,4.58e-21,22;UBERON:0003894,4.58e-21,22;UBERON:0009854,3.39e-20,23;UBERON:0007499,1.15e-18,25;UBERON:0009497,1.15e-18,25;UBERON:0000015,1.15e-18,25;UBERON:0002423,1.15e-18,25;UBERON:0006235,1.15e-18,25;UBERON:0004161,1.15e-18,25;UBERON:0009856,5.50e-18,26;UBERON:0003929,1.70e-15,54;UBERON:0002365,3.01e-15,31;UBERON:0002330,3.01e-15,31;UBERON:0001242,1.00e-13,4;UBERON:0001262,1.00e-13,4;UBERON:0004786,1.00e-13,4;UBERON:0004808,1.00e-13,4;UBERON:0001277,1.00e-13,4;UBERON:0002368,1.29e-13,35;UBERON:0000949,8.49e-11,45;UBERON:0005911,1.66e-10,82;UBERON:0005172,3.82e-09,54;UBERON:0005173,3.82e-09,54;UBERON:0002530,1.93e-08,59;UBERON:0002417,2.58e-08,60;UBERON:0000916,2.58e-08,60;UBERON:0003350,1.59e-07,8;UBERON:0004921,1.75e-07,118;UBERON:0000485,7.91e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33678033231916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73323001075892,2.47247575143499,1.75249214020881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33678033231916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73323001075892,2.47247575143499,1.75249214020881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p6@AFP | |short_description=p6@AFP | ||
}} | }} |
Latest revision as of 13:27, 18 September 2015
Short description: | p6@AFP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_AFP_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | 23bp_to_uc011cbg.1_5end |
EntrezGene: | AFP |
HGNC: | 317 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.11e-37 | 12 |
endodermal cell | 1.72e-14 | 58 |
intestinal epithelial cell | 1.00e-13 | 4 |
Ontology term | p-value | n |
---|---|---|
liver | 3.20e-24 | 19 |
digestive gland | 3.20e-24 | 19 |
liver bud | 3.20e-24 | 19 |
hepatic diverticulum | 4.58e-21 | 22 |
liver primordium | 4.58e-21 | 22 |
digestive tract diverticulum | 3.39e-20 | 23 |
epithelial sac | 1.15e-18 | 25 |
epithelium of foregut-midgut junction | 1.15e-18 | 25 |
anatomical boundary | 1.15e-18 | 25 |
hepatobiliary system | 1.15e-18 | 25 |
foregut-midgut junction | 1.15e-18 | 25 |
septum transversum | 1.15e-18 | 25 |
sac | 5.50e-18 | 26 |
gut epithelium | 1.70e-15 | 54 |
exocrine gland | 3.01e-15 | 31 |
exocrine system | 3.01e-15 | 31 |
intestinal mucosa | 1.00e-13 | 4 |
wall of intestine | 1.00e-13 | 4 |
gastrointestinal system mucosa | 1.00e-13 | 4 |
gastrointestinal system epithelium | 1.00e-13 | 4 |
intestinal epithelium | 1.00e-13 | 4 |
endocrine gland | 1.29e-13 | 35 |
endocrine system | 8.49e-11 | 45 |
endo-epithelium | 1.66e-10 | 82 |
abdomen element | 3.82e-09 | 54 |
abdominal segment element | 3.82e-09 | 54 |
gland | 1.93e-08 | 59 |
abdominal segment of trunk | 2.58e-08 | 60 |
abdomen | 2.58e-08 | 60 |
epithelium of mucosa | 1.59e-07 | 8 |
subdivision of digestive tract | 1.75e-07 | 118 |
simple columnar epithelium | 7.91e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 2.57e-12 | 39 |