FFCP PHASE1:Hg19::chr12:52448338..52448401,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3164 | |EntrezGene=3164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=7980 | |HGNC=7980 | ||
|TSSclassifier=strong | |||
|UniProt=Q53Y00,Q6IBU8 | |UniProt=Q53Y00,Q6IBU8 | ||
|association_with_transcript=225bp_to_AB307717,AB464647,AB590255,BT007144,CR456704,CU677577,DQ891134,DQ894313,HQ692855_5end | |association_with_transcript=225bp_to_AB307717,AB464647,AB590255,BT007144,CR456704,CU677577,DQ891134,DQ894313,HQ692855_5end | ||
|cluster_id=chr12:52448338..52448401,+ | |||
|coexpression_cluster_id=C1018 | |coexpression_cluster_id=C1018 | ||
|description=CAGE_peak_7_at_NR4A1_5end | |description=CAGE_peak_7_at_NR4A1_5end | ||
|id=chr12:52448338..52448401,+ | |id=chr12:52448338..52448401,+ | ||
|ontology_enrichment_celltype=CL:0000860!1.62e-17!45;CL:0002057!6.30e-17!42;CL:0000557!1.48e-12!71;CL:0000839!3.07e-11!70;CL:0000766!3.81e-11!76;CL:0002009!1.76e-10!65;CL:0002194!1.33e-09!63;CL:0000576!1.33e-09!63;CL:0000040!1.33e-09!63;CL:0000559!1.33e-09!63 | |ontology_enrichment_celltype=CL:0000860!1.62e-17!45;CL:0002057!6.30e-17!42;CL:0000557!1.48e-12!71;CL:0000839!3.07e-11!70;CL:0000766!3.81e-11!76;CL:0002009!1.76e-10!65;CL:0002194!1.33e-09!63;CL:0000576!1.33e-09!63;CL:0000040!1.33e-09!63;CL:0000559!1.33e-09!63 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.02e-13;33!CL:0002057;9.02e-13;33!CL:0000473;9.84e-10;39!CL:0000234;9.84e-10;39!CL:0000766;5.27e-08;69!CL:0000097;9.54e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.50e-12,42;CL:0002057,3.50e-12,42;CL:0000557,6.65e-12,67;CL:0000766,2.00e-11,72;CL:0000473,2.68e-11,48;CL:0000234,2.68e-11,48;CL:0000839,6.07e-11,66;CL:0002009,1.24e-08,61;CL:0002194,5.31e-08,59;CL:0000576,5.31e-08,59;CL:0000040,5.31e-08,59;CL:0000559,5.31e-08,59;CL:0000097,8.85e-08,5;CL:0002028,8.85e-08,5 | |||
|ontology_enrichment_development_v019=CL:0002057;1.59e-09;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.59e-12!115;UBERON:0002390!2.42e-10!102;UBERON:0003061!2.42e-10!102;UBERON:0002371!5.93e-10!80;UBERON:0000062!7.26e-10!511;UBERON:0001474!1.78e-09!86;UBERON:0004765!2.96e-08!101;UBERON:0001434!2.96e-08!101;UBERON:0002193!2.99e-08!112;UBERON:0002405!3.43e-07!115;UBERON:0000926!5.40e-07!448;UBERON:0004120!5.40e-07!448;UBERON:0006603!5.40e-07!448 | |ontology_enrichment_uberon=UBERON:0007023!4.59e-12!115;UBERON:0002390!2.42e-10!102;UBERON:0003061!2.42e-10!102;UBERON:0002371!5.93e-10!80;UBERON:0000062!7.26e-10!511;UBERON:0001474!1.78e-09!86;UBERON:0004765!2.96e-08!101;UBERON:0001434!2.96e-08!101;UBERON:0002193!2.99e-08!112;UBERON:0002405!3.43e-07!115;UBERON:0000926!5.40e-07!448;UBERON:0004120!5.40e-07!448;UBERON:0006603!5.40e-07!448 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.55e-11,114;UBERON:0002390,9.06e-10,98;UBERON:0003061,9.06e-10,98;UBERON:0002371,1.02e-09,76;UBERON:0001474,1.66e-09,82;UBERON:0002193,3.54e-08,108;UBERON:0001434,4.01e-08,100;UBERON:0004765,4.43e-08,90;UBERON:0002405,1.58e-07,93 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.422863212287913,1.0007329835313,0,0,0,0,0.522371256399677,0,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,1.18009283054671,0,0.154816123316076,0,0,0,0.0774672005803016,0,0,0,0.601633342410425,0.434021741431704,0,0,0,0.290796477559129,0.377875943688809,0.242584061187816,1.39457422143411,4.11167888021826,3.09706370895104,1.1507695692886,1.2808035326455,0.945928919554341,4.82643953031266,8.39130088658974,4.06279459783025,2.44715041405386,3.82068610080984,3.37085226667627,10.7129362329816,13.1580901101198,14.7047538933779,0,0.199463657621632,0,0.870627715885752,0,0.622822248995575,0.251248665256743,0.521482918420201,1.08594422352558,1.21079900526674,0.368277635987565,0.632924774881769,1.90129757680748,2.97646019951061,0.419317291016752,0.336985893439485,1.35159203557356,0,0.570025487482497,0.99458338599545,0.547992461293902,0,0,0,0,0,0,0,0,0,1.76171156811282,0.764546456250458,1.32171328579026,1.12101712596307,0,0,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0.144824403882799,0,0,0.12786256184353,0,0,1.01392563272577,0,0.486634870302636,0,0,0.087834785693126,0.916853528483988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0.25326102332916,0,0.286836620748814,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,4.75201142912821,1.7308685049499,0,0,0,0,0,0,0,2.10333282469236,0.113432183160021,0.358779271377724,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0.243947412259191,0,0,0,0.252320850875628,0.36497735907583,0,0,0,0,0,0.236613600079688,0,0.241011029883482,0.441175890929576,0.217879444092406,0.474541238222193,0.539325232640658,0.392442930250692,0.769494313892781,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,4.92663237895944,0.088048434013226,26.3306706736781,13.8355155280283,20.1987893482208,0.253991577168676,2.29193055334967,0,0,0.616964956219941,1.20137223137567,0.571652865261156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0.205476322550383,0,0,0.197030760201927,0.215627574859517,0.256686072559497,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0.542530047399471,0.207970861530807,0.178428988797162,0,0.35142424497814,0,0,0,0,0.921845842708516,0.0868836144680828,0,0,0.413536052245775,1.72571360654893,1.28073069364133,0.303127571446259,0,0.30239029332968,0,0,0.280660094433074,0.256278298511402,0,0.160853921143607,1.48418066444991,0,0,0,0,0.116210378459959,0.362578348774867,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32218398827431,0.329294892959902,0,0,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68426486367398,2.05111450980652,0,0,0,1.19372242368845,0,0.307160702099232,0,0.281338832821026,0,0,0,2.59022384726391,3.03912307084262,0,0,0.123084805461069,0,0.0898683511473268,0.716084698702437,0,2.56472854656027,0,0,1.93866549219044,0,0,0.7812832832557,0.0874599999961957,0.724999575434793,0.1137934482855,0,0.236387681767936,0.344743373241465,0,0,0,0,0,0,0,2.19385397153973,0.871507708151921,3.62501735124369,1.76985594558733,0.113942055847001,0.23056390438806,0.538545866458633,0,0.957003479195758,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,1.32686346755009,1.22206028986725,1.18608451472249,1.23563938946503,0.313265848516366,0.337005664903385,4.81546588379273,0.234264445725339,0,0.782658475728359,0,0.394584402849391,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0,0.138674673013139,0.173559738335131,1.27390116638691,0.174118413160805,2.44617335538842,0,0.290268993867255,0.292357268344742,0.164230914106418,1.45483524732629,0,0.451961481561065,0,0,0.0633107959558787,0.391102765469606,0,10.4591967422283,0.599428828746391,0,0.114536596165916,0.343189995723929,0,0.124252535565433,1.88555227693436,0,0,0,0,0,0,0,0,0.262887354279314,4.46851842035607,0.687481272035051,6.46085722119133,1.99679000498991,0.858452096273142,0.669514372325618,1.5452198671947,1.08089965062721,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0.196854963029498,0,0,0.136203406111576,0.321506296930038,0,0.83088067605837,0.449947783103001,6.1904156364636,0.0607495566580247,0,0.157611414598396,0.157363764404994,0.844802692155252,4.48218348332112,0.575745591958336,0,2.64836788146173,0.5085370753095,0,0,0,0,0.082092520749339,0.170388021785422,0,0.439656701034247,2.65013777824443,0.258565912723101,0,1.02652102730598,0,6.19366992892629,5.50215067848831,8.69902016229111,0,0,0,0,0,1.5041393641362,0,0.327872630709804,0,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0.0620964029413835,0,0,1.81978941049977,8.278494672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| ||
|short_description=p7@NR4A1 | |short_description=p7@NR4A1 | ||
}} | }} |
Latest revision as of 21:16, 18 September 2015
Short description: | p7@NR4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_NR4A1_5end |
Coexpression cluster: | C1018_immature_CD14_Mast_cervical_seminal_heart_ovary |
Association with transcript: | 225bp_to_AB307717, AB464647, AB590255, BT007144, CR456704, CU677577, DQ891134, DQ894313, HQ692855_5end |
EntrezGene: | NR4A1 |
HGNC: | 7980 |
UniProt: | Q53Y00Q6IBU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.50e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.50e-12 | 42 |
granulocyte monocyte progenitor cell | 6.65e-12 | 67 |
myeloid leukocyte | 2.00e-11 | 72 |
defensive cell | 2.68e-11 | 48 |
phagocyte | 2.68e-11 | 48 |
myeloid lineage restricted progenitor cell | 6.07e-11 | 66 |
macrophage dendritic cell progenitor | 1.24e-08 | 61 |
monopoietic cell | 5.31e-08 | 59 |
monocyte | 5.31e-08 | 59 |
monoblast | 5.31e-08 | 59 |
promonocyte | 5.31e-08 | 59 |
mast cell | 8.85e-08 | 5 |
basophil mast progenitor cell | 8.85e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.55e-11 | 114 |
hematopoietic system | 9.06e-10 | 98 |
blood island | 9.06e-10 | 98 |
bone marrow | 1.02e-09 | 76 |
bone element | 1.66e-09 | 82 |
hemolymphoid system | 3.54e-08 | 108 |
skeletal system | 4.01e-08 | 100 |
skeletal element | 4.43e-08 | 90 |
immune system | 1.58e-07 | 93 |