FFCP PHASE1:Hg19::chr2:182543249..182543261,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4760 | |EntrezGene=4760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=7762 | |HGNC=7762 | ||
|TSSclassifier=strong | |||
|UniProt=Q13562 | |UniProt=Q13562 | ||
|association_with_transcript=64bp_to_U80578_5end | |association_with_transcript=64bp_to_U80578_5end | ||
|cluster_id=chr2:182543249..182543261,- | |||
|coexpression_cluster_id=C939 | |||
|description=CAGE_peak_5_at_NEUROD1_5end | |description=CAGE_peak_5_at_NEUROD1_5end | ||
|id=chr2:182543249..182543261,- | |id=chr2:182543249..182543261,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002535;1.61e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,1.50e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.73e-20;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:154;2.40e-08;2!DOID:4236;2.40e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:154,2.15e-08,2;DOID:4236,2.15e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000955!6.55e-22!69;UBERON:0006238!6.55e-22!69;UBERON:0005743!4.14e-21!86;UBERON:0000073!7.79e-21!94;UBERON:0001016!7.79e-21!94;UBERON:0001017!4.68e-20!82;UBERON:0001049!4.50e-19!57;UBERON:0005068!4.50e-19!57;UBERON:0006241!4.50e-19!57;UBERON:0007135!4.50e-19!57;UBERON:0002616!2.54e-18!59;UBERON:0003075!5.13e-17!86;UBERON:0007284!5.13e-17!86;UBERON:0002619!1.74e-16!22;UBERON:0002346!4.39e-16!90;UBERON:0003056!2.59e-15!61;UBERON:0002780!4.32e-15!41;UBERON:0001890!4.32e-15!41;UBERON:0006240!4.32e-15!41;UBERON:0003080!1.10e-14!42;UBERON:0000956!2.07e-14!25;UBERON:0000203!2.07e-14!25;UBERON:0001950!2.10e-14!20;UBERON:0001869!1.45e-13!32;UBERON:0000033!1.99e-13!123;UBERON:0002791!4.10e-13!33;UBERON:0002020!1.09e-12!34;UBERON:0003528!1.09e-12!34;UBERON:0001893!1.09e-12!34;UBERON:0000153!1.33e-12!129;UBERON:0007811!1.33e-12!129;UBERON:0004121!5.73e-12!169;UBERON:0001905!1.28e-11!2;UBERON:0002757!1.28e-11!2;UBERON:0010134!1.28e-11!2;UBERON:0002784!1.28e-11!2;UBERON:0005408!1.28e-11!2;UBERON:0001899!1.28e-11!2;UBERON:0000924!1.41e-11!173;UBERON:0006601!1.41e-11!173;UBERON:0001871!1.37e-10!7;UBERON:0000349!1.67e-09!5;UBERON:0007023!5.42e-09!115;UBERON:0004733!4.39e-07!12;UBERON:0002028!4.39e-07!12;UBERON:0007277!4.39e-07!12 | |ontology_enrichment_uberon=UBERON:0000955!6.55e-22!69;UBERON:0006238!6.55e-22!69;UBERON:0005743!4.14e-21!86;UBERON:0000073!7.79e-21!94;UBERON:0001016!7.79e-21!94;UBERON:0001017!4.68e-20!82;UBERON:0001049!4.50e-19!57;UBERON:0005068!4.50e-19!57;UBERON:0006241!4.50e-19!57;UBERON:0007135!4.50e-19!57;UBERON:0002616!2.54e-18!59;UBERON:0003075!5.13e-17!86;UBERON:0007284!5.13e-17!86;UBERON:0002619!1.74e-16!22;UBERON:0002346!4.39e-16!90;UBERON:0003056!2.59e-15!61;UBERON:0002780!4.32e-15!41;UBERON:0001890!4.32e-15!41;UBERON:0006240!4.32e-15!41;UBERON:0003080!1.10e-14!42;UBERON:0000956!2.07e-14!25;UBERON:0000203!2.07e-14!25;UBERON:0001950!2.10e-14!20;UBERON:0001869!1.45e-13!32;UBERON:0000033!1.99e-13!123;UBERON:0002791!4.10e-13!33;UBERON:0002020!1.09e-12!34;UBERON:0003528!1.09e-12!34;UBERON:0001893!1.09e-12!34;UBERON:0000153!1.33e-12!129;UBERON:0007811!1.33e-12!129;UBERON:0004121!5.73e-12!169;UBERON:0001905!1.28e-11!2;UBERON:0002757!1.28e-11!2;UBERON:0010134!1.28e-11!2;UBERON:0002784!1.28e-11!2;UBERON:0005408!1.28e-11!2;UBERON:0001899!1.28e-11!2;UBERON:0000924!1.41e-11!173;UBERON:0006601!1.41e-11!173;UBERON:0001871!1.37e-10!7;UBERON:0000349!1.67e-09!5;UBERON:0007023!5.42e-09!115;UBERON:0004733!4.39e-07!12;UBERON:0002028!4.39e-07!12;UBERON:0007277!4.39e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.24e-10;6!UBERON:0006955;1.61e-08;2!UBERON:0004801;1.61e-08;2!UBERON:0001905;2.40e-08;2!UBERON:0002757;2.40e-08;2!UBERON:0010134;2.40e-08;2!UBERON:0005408;2.40e-08;2!UBERON:0001899;2.40e-08;2!UBERON:0002680;2.22e-07;9!UBERON:0001895;2.22e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.24e-10,6;UBERON:0006215,1.24e-10,6;UBERON:0006955,1.50e-08,2;UBERON:0004801,1.50e-08,2;UBERON:0001905,3.08e-08,2;UBERON:0002757,3.08e-08,2;UBERON:0010134,3.08e-08,2;UBERON:0005408,3.08e-08,2;UBERON:0001899,3.08e-08,2;UBERON:0002680,2.22e-07,9;UBERON:0001895,2.22e-07,9;UBERON:0010092,2.22e-07,9;UBERON:0001016,4.82e-07,89;UBERON:0000955,4.87e-07,68;UBERON:0006238,4.87e-07,68 | |||
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|short_description=p5@NEUROD1 | |short_description=p5@NEUROD1 | ||
}} | }} |
Latest revision as of 21:22, 18 September 2015
Short description: | p5@NEUROD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_NEUROD1_5end |
Coexpression cluster: | C939_neuroblastoma_argyrophil_small_cerebellum_retinoblastoma_pineal_medulloblastoma |
Association with transcript: | 64bp_to_U80578_5end |
EntrezGene: | NEUROD1 |
HGNC: | 7762 |
UniProt: | Q13562 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 1.50e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.24e-10 | 6 |
rhombic lip | 1.24e-10 | 6 |
uterine epithelium | 1.50e-08 | 2 |
cervix epithelium | 1.50e-08 | 2 |
pineal body | 3.08e-08 | 2 |
regional part of epithalamus | 3.08e-08 | 2 |
secretory circumventricular organ | 3.08e-08 | 2 |
circumventricular organ | 3.08e-08 | 2 |
epithalamus | 3.08e-08 | 2 |
regional part of metencephalon | 2.22e-07 | 9 |
metencephalon | 2.22e-07 | 9 |
future metencephalon | 2.22e-07 | 9 |
nervous system | 4.82e-07 | 89 |
brain | 4.87e-07 | 68 |
future brain | 4.87e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
mixed cell type cancer | 2.15e-08 | 2 |
carcinosarcoma | 2.15e-08 | 2 |