FFCP PHASE1:Hg19::chr19:47220335..47220401,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25865 | |EntrezGene=25865 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17293 | |HGNC=17293 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BZL6 | |UniProt=Q9BZL6 | ||
|association_with_transcript=0bp_to_ENST00000291281,ENST00000433867,NM_001079880,NM_001079881,NM_016457,uc002pfh.2,uc002pfi.2,uc002pfj.2,uc002pfk.2,uc010xye.1_5end | |association_with_transcript=0bp_to_ENST00000291281,ENST00000433867,NM_001079880,NM_001079881,NM_016457,uc002pfh.2,uc002pfi.2,uc002pfj.2,uc002pfk.2,uc010xye.1_5end | ||
|cluster_id=chr19:47220335..47220401,- | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_1_at_PRKD2_5end | |description=CAGE_peak_1_at_PRKD2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000838!1.17e-14!52;CL:0000542!1.84e-14!53;CL:0000051!1.84e-14!53;CL:0000791!4.59e-08!18;CL:0000789!4.59e-08!18;CL:0002420!4.59e-08!18;CL:0002419!4.59e-08!18;CL:0000790!4.59e-08!18;CL:0000084!2.70e-07!25;CL:0000827!2.70e-07!25;CL:0000945!3.61e-07!24;CL:0000826!3.61e-07!24 | |ontology_enrichment_celltype=CL:0000838!1.17e-14!52;CL:0000542!1.84e-14!53;CL:0000051!1.84e-14!53;CL:0000791!4.59e-08!18;CL:0000789!4.59e-08!18;CL:0002420!4.59e-08!18;CL:0002419!4.59e-08!18;CL:0000790!4.59e-08!18;CL:0000084!2.70e-07!25;CL:0000827!2.70e-07!25;CL:0000945!3.61e-07!24;CL:0000826!3.61e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000542;1.98e-08;53!CL:0000791;4.92e-08;18!CL:0000789;4.92e-08;18!CL:0002419;4.92e-08;18!CL:0000084;2.70e-07;25!CL:0000945;3.14e-07;24 | |ontology_enrichment_celltype_v019=CL:0000542;1.98e-08;53!CL:0000791;4.92e-08;18!CL:0000789;4.92e-08;18!CL:0002419;4.92e-08;18!CL:0000084;2.70e-07;25!CL:0000945;3.14e-07;24 | ||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.17e-14,52;CL:0000542,1.84e-14,53;CL:0000051,1.84e-14,53;CL:0000791,4.59e-08,18;CL:0000789,4.59e-08,18;CL:0002420,4.59e-08,18;CL:0002419,4.59e-08,18;CL:0000790,4.59e-08,18;CL:0002032,1.19e-07,161;CL:0000837,1.19e-07,161;CL:0000037,1.90e-07,168;CL:0000084,2.70e-07,25;CL:0000827,2.70e-07,25;CL:0000945,3.61e-07,24;CL:0000826,3.61e-07,24;CL:0000988,5.94e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000051;1.98e-08;53!CL:0000790;4.92e-08;18 | |ontology_enrichment_development_v019=CL:0000051;1.98e-08;53!CL:0000790;4.92e-08;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003887!9.64e-07!21 | |ontology_enrichment_uberon=UBERON:0003887!9.64e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;4.72e-07;30!UBERON:0001008;4.72e-07;30 | |ontology_enrichment_uberon_v019=UBERON:0006554;4.72e-07;30!UBERON:0001008;4.72e-07;30 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001008,9.87e-07,48 | |||
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| ||
|short_description=p1@PRKD2 | |short_description=p1@PRKD2 | ||
}} | }} |
Latest revision as of 21:35, 18 September 2015
Short description: | p1@PRKD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRKD2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000291281, ENST00000433867, NM_001079880, NM_001079881, NM_016457, uc002pfh.2, uc002pfi.2, uc002pfj.2, uc002pfk.2, uc010xye.1_5end |
EntrezGene: | PRKD2 |
HGNC: | 17293 |
UniProt: | Q9BZL6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.17e-14 | 52 |
lymphocyte | 1.84e-14 | 53 |
common lymphoid progenitor | 1.84e-14 | 53 |
mature alpha-beta T cell | 4.59e-08 | 18 |
alpha-beta T cell | 4.59e-08 | 18 |
immature T cell | 4.59e-08 | 18 |
mature T cell | 4.59e-08 | 18 |
immature alpha-beta T cell | 4.59e-08 | 18 |
hematopoietic oligopotent progenitor cell | 1.19e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.19e-07 | 161 |
hematopoietic stem cell | 1.90e-07 | 168 |
T cell | 2.70e-07 | 25 |
pro-T cell | 2.70e-07 | 25 |
lymphocyte of B lineage | 3.61e-07 | 24 |
pro-B cell | 3.61e-07 | 24 |
hematopoietic cell | 5.94e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
renal system | 9.87e-07 | 48 |