FFCP PHASE1:Hg19::chr17:18266818..18266872,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6470 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10850 | |||
|TSSclassifier=strong | |||
|UniProt=A8MX84,A8MYA6,P34896 | |||
|association_with_transcript=0bp_to_ENST00000395682,ENST00000395685,NM_004169,NM_148918,uc002gta.2,uc002gtb.2,uc002gtd.1,uc010cqb.2,uc010vxt.1,uc010vxu.1_5end | |||
|cluster_id=chr17:18266818..18266872,- | |||
|description=CAGE_peak_1_at_SHMT1_5end | |||
|id=chr17:18266818..18266872,- | |||
|ontology_enrichment_celltype=CL:0000066!3.58e-16!254;CL:1000449!2.31e-08!16;CL:1000497!2.89e-08!18;CL:0002518!2.89e-08!18;CL:0000325!3.60e-07!39;CL:0002681!6.92e-07!13;CL:0002584!6.92e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:1000449;4.46e-09;15!CL:1000497;5.67e-09;17!CL:0002518;5.67e-09;17!CL:0002681;1.42e-07;12!CL:0002584;1.42e-07;12!CL:1000507;2.95e-07;10!CL:1000494;2.95e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.33e-16,253;CL:1000449,4.87e-09,15;CL:1000497,7.21e-09,17;CL:0002518,7.21e-09,17;CL:0002681,1.48e-07,12;CL:0002584,1.48e-07,12;CL:1000507,3.11e-07,10;CL:1000494,3.11e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!4.82e-09!235;DOID:14566!2.76e-08!239;DOID:2531!7.98e-07!51;DOID:0060083!7.98e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.09e-09,235;DOID:14566,2.80e-08,239;DOID:2531,8.32e-07,51;DOID:0060083,8.32e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0002113!1.75e-10!27;UBERON:0003918!1.75e-10!27;UBERON:0005095!1.75e-10!27;UBERON:0007687!1.75e-10!27;UBERON:0005177!3.66e-10!107;UBERON:0000063!1.01e-09!97;UBERON:0005172!6.36e-09!55;UBERON:0005173!6.36e-09!55;UBERON:0006555!1.57e-08!17;UBERON:0005103!1.57e-08!17;UBERON:0000083!1.57e-08!17;UBERON:0009201!1.57e-08!17;UBERON:0004819!1.57e-08!17;UBERON:0006553!1.57e-08!17;UBERON:0003074!1.57e-08!17;UBERON:0003060!1.57e-08!17;UBERON:0003887!1.87e-08!21;UBERON:0004211!2.31e-08!16;UBERON:0001285!2.31e-08!16;UBERON:0007684!2.31e-08!16;UBERON:0003220!2.31e-08!16;UBERON:0004208!2.31e-08!16;UBERON:0000080!4.10e-08!18;UBERON:0002120!4.10e-08!18;UBERON:0004875!4.10e-08!18;UBERON:0005721!4.10e-08!18;UBERON:0005754!4.10e-08!18;UBERON:0007297!4.10e-08!18;UBERON:0000489!4.21e-08!32;UBERON:0000064!2.27e-07!219;UBERON:0004876!3.40e-07!20;UBERON:0000072!4.97e-07!46;UBERON:0002417!5.97e-07!61;UBERON:0000916!5.97e-07!61;UBERON:0001225!6.92e-07!13;UBERON:0008987!6.92e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;2.44e-11;24!UBERON:0011143;2.44e-11;24!UBERON:0006554;3.25e-09;30!UBERON:0001008;3.25e-09;30!UBERON:0006555;4.46e-09;15!UBERON:0004819;4.46e-09;15!UBERON:0001285;4.46e-09;15!UBERON:0007684;4.46e-09;15!UBERON:0000489;2.46e-08;29!UBERON:0001225;1.42e-07;12!UBERON:0008987;1.42e-07;12!UBERON:0004211;2.95e-07;10!UBERON:0009773;2.95e-07;10!UBERON:0001231;2.95e-07;10!UBERON:0004810;2.95e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,5.15e-11,26;UBERON:0003918,5.15e-11,26;UBERON:0011143,5.15e-11,26;UBERON:0005095,5.15e-11,26;UBERON:0007687,5.15e-11,26;UBERON:0005177,1.37e-10,101;UBERON:0006555,3.49e-09,16;UBERON:0004819,3.49e-09,16;UBERON:0005172,3.52e-09,54;UBERON:0005173,3.52e-09,54;UBERON:0004211,4.87e-09,15;UBERON:0009773,4.87e-09,15;UBERON:0001231,4.87e-09,15;UBERON:0001285,4.87e-09,15;UBERON:0007684,4.87e-09,15;UBERON:0004208,4.87e-09,15;UBERON:0000489,1.82e-08,31;UBERON:0001225,1.48e-07,12;UBERON:0008987,1.48e-07,12;UBERON:0006554,3.08e-07,47;UBERON:0004810,3.11e-07,10;UBERON:0002417,3.94e-07,60;UBERON:0000916,3.94e-07,60;UBERON:0001008,7.42e-07,48;UBERON:0000072,8.47e-07,47 | |||
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| |||
|short_description=p1@SHMT1 | |||
}} |
Latest revision as of 23:06, 18 September 2015
Short description: | p1@SHMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHMT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000395682, ENST00000395685, NM_004169, NM_148918, uc002gta.2, uc002gtb.2, uc002gtd.1, uc010cqb.2, uc010vxt.1, uc010vxu.1_5end |
EntrezGene: | SHMT1 |
HGNC: | 10850 |
UniProt: | A8MX84A8MYA6P34896 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.33e-16 | 253 |
epithelial cell of nephron | 4.87e-09 | 15 |
kidney cell | 7.21e-09 | 17 |
kidney epithelial cell | 7.21e-09 | 17 |
kidney cortical cell | 1.48e-07 | 12 |
renal cortical epithelial cell | 1.48e-07 | 12 |
kidney tubule cell | 3.11e-07 | 10 |
nephron tubule epithelial cell | 3.11e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
kidney | 5.15e-11 | 26 |
kidney mesenchyme | 5.15e-11 | 26 |
upper urinary tract | 5.15e-11 | 26 |
kidney rudiment | 5.15e-11 | 26 |
kidney field | 5.15e-11 | 26 |
trunk region element | 1.37e-10 | 101 |
excretory tube | 3.49e-09 | 16 |
kidney epithelium | 3.49e-09 | 16 |
abdomen element | 3.52e-09 | 54 |
abdominal segment element | 3.52e-09 | 54 |
nephron epithelium | 4.87e-09 | 15 |
renal tubule | 4.87e-09 | 15 |
nephron tubule | 4.87e-09 | 15 |
nephron | 4.87e-09 | 15 |
uriniferous tubule | 4.87e-09 | 15 |
nephrogenic mesenchyme | 4.87e-09 | 15 |
cavitated compound organ | 1.82e-08 | 31 |
cortex of kidney | 1.48e-07 | 12 |
renal parenchyma | 1.48e-07 | 12 |
urinary system structure | 3.08e-07 | 47 |
nephron tubule epithelium | 3.11e-07 | 10 |
abdominal segment of trunk | 3.94e-07 | 60 |
abdomen | 3.94e-07 | 60 |
renal system | 7.42e-07 | 48 |
segment of respiratory tract | 8.47e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.09e-09 | 235 |
disease of cellular proliferation | 2.80e-08 | 239 |
hematologic cancer | 8.32e-07 | 51 |
immune system cancer | 8.32e-07 | 51 |