FFCP PHASE1:Hg19::chr6:45296048..45296082,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=860 | |EntrezGene=860 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10472 | |HGNC=10472 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T802,Q13950,F6RGB9 | |UniProt=Q5T802,Q13950,F6RGB9 | ||
|association_with_transcript=0bp_to_ENST00000352853,ENST00000465038,ENST00000483243,ENST00000541979,NM_001015051,NM_001024630,uc003oxs.1,uc011dvx.1,uc011dvy.1_5end | |association_with_transcript=0bp_to_ENST00000352853,ENST00000465038,ENST00000483243,ENST00000541979,NM_001015051,NM_001024630,uc003oxs.1,uc011dvx.1,uc011dvy.1_5end | ||
|cluster_id=chr6:45296048..45296082,+ | |||
|description=CAGE_peak_1_at_RUNX2_5end | |description=CAGE_peak_1_at_RUNX2_5end | ||
|id=chr6:45296048..45296082,+ | |id=chr6:45296048..45296082,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.48e-14!180;CL:0000219!5.58e-14!390;CL:0002320!1.18e-13!365;CL:0000048!2.65e-13!430;CL:0000034!1.18e-12!444;CL:0000723!4.27e-12!436;CL:0000134!1.11e-11!358;CL:0002057!7.83e-08!42;CL:0000625!2.34e-07!11;CL:0000062!3.10e-07!11;CL:0000375!3.10e-07!11;CL:0000335!3.10e-07!11;CL:0002371!6.59e-07!591 | |ontology_enrichment_celltype=CL:0000055!2.48e-14!180;CL:0000219!5.58e-14!390;CL:0002320!1.18e-13!365;CL:0000048!2.65e-13!430;CL:0000034!1.18e-12!444;CL:0000723!4.27e-12!436;CL:0000134!1.11e-11!358;CL:0002057!7.83e-08!42;CL:0000625!2.34e-07!11;CL:0000062!3.10e-07!11;CL:0000375!3.10e-07!11;CL:0000335!3.10e-07!11;CL:0002371!6.59e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0000625;7.59e-10;11!CL:0000860;3.36e-09;33!CL:0002057;3.36e-09;33!CL:0000128;1.06e-08;7!CL:0000126;1.06e-08;7!CL:0000127;1.06e-08;7!CL:0000243;6.85e-08;15!CL:0000125;6.85e-08;15!CL:0000062;1.12e-07;9!CL:0002540;4.45e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000219,9.42e-15,386;CL:0000048,1.36e-14,427;CL:0000034,3.38e-14,441;CL:0002320,6.49e-14,361;CL:0000723,9.19e-14,433;CL:0000134,8.49e-12,354;CL:0000625,1.04e-09,11;CL:0000128,1.09e-08,7;CL:0000126,1.09e-08,7;CL:0000127,1.09e-08,7;CL:0002453,1.09e-08,7;CL:0000243,8.45e-08,15;CL:0000125,8.45e-08,15;CL:0000030,8.45e-08,15;CL:0000339,8.45e-08,15;CL:0000062,2.26e-07,11;CL:0000375,2.26e-07,11;CL:0000335,2.26e-07,11;CL:0002540,4.42e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000339;6.85e-08;15!CL:0000335;2.18e-07;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!1.66e-13!375;UBERON:0002204!4.24e-09!167;UBERON:0004765!4.29e-08!101;UBERON:0001434!4.29e-08!101 | |ontology_enrichment_uberon=UBERON:0002384!1.66e-13!375;UBERON:0002204!4.24e-09!167;UBERON:0004765!4.29e-08!101;UBERON:0001434!4.29e-08!101 | ||
|ontology_enrichment_uberon_v019=UBERON:0001434;1.72e-10;36!UBERON:0004765;4.15e-10;26!UBERON:0002204;4.30e-08;70!UBERON:0000075;9.07e-07;16!UBERON:0001474;9.93e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,6.27e-14,371;UBERON:0002204,2.35e-12,167;UBERON:0001434,1.79e-11,100;UBERON:0004765,1.43e-09,90;UBERON:0001474,3.97e-07,82;UBERON:0000075,9.69e-07,16 | |||
|phase1_expression=4.36028110249336,4.28201047781966,3.24195129420734,0,5.81049422755474,1.74467704820074,2.53299878168311,0,0,0,0.697801167972428,0,0,3.58922423584135,4.63956326019082,8.0679017574213,6.02694528023977,10.2243412654232,5.85519358548608,51.5877233341741,21.0120711981581,150.77172103096,28.3373627259746,52.2860303778418,30.8834893403215,0.0764134057479513,0,0,0.393364276848904,0,2.16742572642506,0,0,0,0,0,7.04641054403633,0.553995408531877,0.601633342410425,0.217010870715852,0,1.29557466407592,0.257575567634187,1.30858414901608,1.88937971844405,2.66842467306598,0.697287110717054,1.23350366406548,2.16794459626573,1.7261543539329,4.09857130446561,3.78371567821736,3.44745680736619,1.93645405075148,0,1.12945403725563,2.18324920046277,2.24723484445085,1.22433556948361,2.24650318953266,3.19668562899521,0.659702600373432,1.59570926097305,0.426224750532694,2.32167390902867,1.13477044938228,0.622822248995575,1.00499466102697,3.12889751052121,6.29847649644838,4.84319602106695,3.31449872388808,3.16462387440884,0.422510572623884,0.425208599930087,0,0.673971786878971,1.05123824989054,1.12507910687956,0,1.19350006319454,0,0,0,0,0,0,0,0,0,0,0,0,7.93027971474155,2.24203425192614,5.26768169550154,0.393419540227666,0,0,1.17030546773475,0.32592226663359,0,0,0.557052284425868,0.589211814949674,0.886135578334485,1.08321545506006,0.384273959177026,0.260118695119756,0.164437904603676,0,0.579606171470105,4.30031033169975,5.61835738988397,5.22677619024884,0.339928028092699,0.383220493601921,0,1.01207876807801,6.05274287215784,9.11516835398986,7.60361635558699,9.63680762097746,13.6945673935228,11.2437653897111,4.73554504088034,8.21127996921047,4.23374160771938,1.06976078313403,13.1790207533347,9.75227465255847,4.69490601792545,0,0,1.00267582127178,5.21447468258965,2.3858578411533,0.973269740605272,97.465396496154,46.3414440696759,30.1273314927422,1.17881167947941,0,0,0,0,0,1.90792499444274,7.43593384014166,13.7439275491939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0.379891534993739,0.794455084879313,2.86836620748814,1.06400514659507,3.36406560085384,0,0.49333509683432,1.8672662123986,0.134710672069688,0.817309515567294,2.4217188423189,7.49028701823999,0.234321431833797,0.312160076830321,0.570471821544449,0.149448680551801,0.822041490506354,0.323745888736263,0.842704840213491,0,2.45668634623536,0.309977343527296,53.4601285776924,24.4794259985771,0,0,7.23845290002485,7.25687415257392,0,27.216612494612,24.2125358681226,15.1740439495663,0.567160915800105,0.717558542755448,4.05759038755278,0.423863802319124,0,0.824420233907511,0.772921620136887,1.11670113798954,0.168776332241266,0.194874010322397,0.504867548488229,0.276149695926898,0.161646056818812,1.42003837006646,1.0075209822764,0,0,0,0,0,0.132529768321485,0.232387885739037,0.310983165046111,0,0,14.0804579096834,20.5837100221723,4.14404764057442,54.3310475797416,23.1001434134267,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,4.80389868835872,0,0,0,0,0,0,10.1031939417691,28.5188796238689,1.05667824812239,0,0,0,0,0,0.738651018262192,0,0.297262324577456,0,1.34385702559088,1.27597587518148,0,0,0.383382679165211,0,1.84901711427775,0.621984346622316,0.720599767084807,1.00993946741104,0.317489471460845,0.381988425558278,0,3.4214489204541,0.102827492703324,0,0.285826432630578,0,0,0,1.55126058909333,3.57656445851882,0.845302752556,0,0,21.6054194380199,8.5109479213967,10.1240428026118,0.285955987316295,0,0,0.977208552881205,0,3.16780749173372,1.20575750823834,0,0.099972991182057,0,0,0,0,0,0,0,0.61642896765115,0.179060963239896,0,0.197030760201927,0.215627574859517,0.256686072559497,4.31960861178188,0,1.54657762555539,1.67516265334349,2.55175500661265,0,0,0,6.37995756939527,18.0061387581484,13.291986161287,1.24782516918484,0.713715955188647,0.157702415033935,0.819989904948992,10.2321673907424,27.2889004867182,5.17365356462525,11.9560607736379,5.16233671916769,0.434418072340414,0.587403472388222,3.77457766191941,2.06768026122887,1.94142780736755,1.921096040462,0,0,0.30239029332968,0,2.91577749247319,0.841980283299221,0.768834895534206,1.02341449813341,0.321707842287215,1.48418066444991,2.15893571323718,2.48586415438378,1.97105174433142,0.519254429183621,1.97557643381931,0,0.200506470303285,0,0,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.261435451024901,0.512900250232778,0,0.325378394664303,0.309123034943167,216.10393697129,229.871466778758,0.574265537996172,0,0,0.870036464629098,3.69716681075147,3.83759186815324,4.13509717453592,31.0444507669311,5.94568445048337,1.70453254832202,15.1354460599453,0,0,0.510450849978337,0,0.464845549297286,0.62962469366128,0,1.84820148105653,0,0,0,0,1.86079184679834,0.632758849437452,4.76575484809562,0.511795582622668,7.27496279657665,0.318203247925937,0,3.05783177891635,2.19629623788844,0.706874414074119,0,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0,1.15755106853338,1.9676842561399,0,0.6196469961995,0,3.58528380510129,1.76848273823618,0,0,0,2.96365403663912,0.379473173765715,0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|phase1_expression=4.36028110249336,4.28201047781966,3.24195129420734,0,5.81049422755474,1.74467704820074,2.53299878168311,0,0,0,0.697801167972428,0,0,3.58922423584135,4.63956326019082,8.0679017574213,6.02694528023977,10.2243412654232,5.85519358548608,51.5877233341741,21.0120711981581,150.77172103096,28.3373627259746,52.2860303778418,30.8834893403215,0.0764134057479513,0,0,0.393364276848904,0,2.16742572642506,0,0,0,0,0,7.04641054403633,0.553995408531877,0.601633342410425,0.217010870715852,0,1.29557466407592,0.257575567634187,1.30858414901608,1.88937971844405,2.66842467306598,0.697287110717054,1.23350366406548,2.16794459626573,1.7261543539329,4.09857130446561,3.78371567821736,3.44745680736619,1.93645405075148,0,1.12945403725563,2.18324920046277,2.24723484445085,1.22433556948361,2.24650318953266,3.19668562899521,0.659702600373432,1.59570926097305,0.426224750532694,2.32167390902867,1.13477044938228,0.622822248995575,1.00499466102697,3.12889751052121,6.29847649644838,4.84319602106695,3.31449872388808,3.16462387440884,0.422510572623884,0.425208599930087,0,0.673971786878971,1.05123824989054,1.12507910687956,0,1.19350006319454,0,0,0,0,0,0,0,0,0,0,0,0,7.93027971474155,2.24203425192614,5.26768169550154,0.393419540227666,0,0,1.17030546773475,0.32592226663359,0,0,0.557052284425868,0.589211814949674,0.886135578334485,1.08321545506006,0.384273959177026,0.260118695119756,0.164437904603676,0,0.579606171470105,4.30031033169975,5.61835738988397,5.22677619024884,0.339928028092699,0.383220493601921,0,1.01207876807801,6.05274287215784,9.11516835398986,7.60361635558699,9.63680762097746,13.6945673935228,11.2437653897111,4.73554504088034,8.21127996921047,4.23374160771938,1.06976078313403,13.1790207533347,9.75227465255847,4.69490601792545,0,0,1.00267582127178,5.21447468258965,2.3858578411533,0.973269740605272,97.465396496154,46.3414440696759,30.1273314927422,1.17881167947941,0,0,0,0,0,1.90792499444274,7.43593384014166,13.7439275491939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0.379891534993739,0.794455084879313,2.86836620748814,1.06400514659507,3.36406560085384,0,0.49333509683432,1.8672662123986,0.134710672069688,0.817309515567294,2.4217188423189,7.49028701823999,0.234321431833797,0.312160076830321,0.570471821544449,0.149448680551801,0.822041490506354,0.323745888736263,0.842704840213491,0,2.45668634623536,0.309977343527296,53.4601285776924,24.4794259985771,0,0,7.23845290002485,7.25687415257392,0,27.216612494612,24.2125358681226,15.1740439495663,0.567160915800105,0.717558542755448,4.05759038755278,0.423863802319124,0,0.824420233907511,0.772921620136887,1.11670113798954,0.168776332241266,0.194874010322397,0.504867548488229,0.276149695926898,0.161646056818812,1.42003837006646,1.0075209822764,0,0,0,0,0,0.132529768321485,0.232387885739037,0.310983165046111,0,0,14.0804579096834,20.5837100221723,4.14404764057442,54.3310475797416,23.1001434134267,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,4.80389868835872,0,0,0,0,0,0,10.1031939417691,28.5188796238689,1.05667824812239,0,0,0,0,0,0.738651018262192,0,0.297262324577456,0,1.34385702559088,1.27597587518148,0,0,0.383382679165211,0,1.84901711427775,0.621984346622316,0.720599767084807,1.00993946741104,0.317489471460845,0.381988425558278,0,3.4214489204541,0.102827492703324,0,0.285826432630578,0,0,0,1.55126058909333,3.57656445851882,0.845302752556,0,0,21.6054194380199,8.5109479213967,10.1240428026118,0.285955987316295,0,0,0.977208552881205,0,3.16780749173372,1.20575750823834,0,0.099972991182057,0,0,0,0,0,0,0,0.61642896765115,0.179060963239896,0,0.197030760201927,0.215627574859517,0.256686072559497,4.31960861178188,0,1.54657762555539,1.67516265334349,2.55175500661265,0,0,0,6.37995756939527,18.0061387581484,13.291986161287,1.24782516918484,0.713715955188647,0.157702415033935,0.819989904948992,10.2321673907424,27.2889004867182,5.17365356462525,11.9560607736379,5.16233671916769,0.434418072340414,0.587403472388222,3.77457766191941,2.06768026122887,1.94142780736755,1.921096040462,0,0,0.30239029332968,0,2.91577749247319,0.841980283299221,0.768834895534206,1.02341449813341,0.321707842287215,1.48418066444991,2.15893571323718,2.48586415438378,1.97105174433142,0.519254429183621,1.97557643381931,0,0.200506470303285,0,0,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.261435451024901,0.512900250232778,0,0.325378394664303,0.309123034943167,216.10393697129,229.871466778758,0.574265537996172,0,0,0.870036464629098,3.69716681075147,3.83759186815324,4.13509717453592,31.0444507669311,5.94568445048337,1.70453254832202,15.1354460599453,0,0,0.510450849978337,0,0.464845549297286,0.62962469366128,0,1.84820148105653,0,0,0,0,1.86079184679834,0.632758849437452,4.76575484809562,0.511795582622668,7.27496279657665,0.318203247925937,0,3.05783177891635,2.19629623788844,0.706874414074119,0,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0,1.15755106853338,1.9676842561399,0,0.6196469961995,0,3.58528380510129,1.76848273823618,0,0,0,2.96365403663912,0.379473173765715,0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| ||
|short_description=p1@RUNX2 | |short_description=p1@RUNX2 | ||
}} | }} |
Latest revision as of 01:05, 19 September 2015
Short description: | p1@RUNX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RUNX2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000352853, ENST00000465038, ENST00000483243, ENST00000541979, NM_001015051, NM_001024630, uc003oxs.1, uc011dvx.1, uc011dvy.1_5end |
EntrezGene: | RUNX2 |
HGNC: | 10472 |
UniProt: | Q5T802Q13950F6RGB9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
motile cell | 9.42e-15 | 386 |
multi fate stem cell | 1.36e-14 | 427 |
stem cell | 3.38e-14 | 441 |
connective tissue cell | 6.49e-14 | 361 |
somatic stem cell | 9.19e-14 | 433 |
mesenchymal cell | 8.49e-12 | 354 |
CD8-positive, alpha-beta T cell | 1.04e-09 | 11 |
oligodendrocyte | 1.09e-08 | 7 |
macroglial cell | 1.09e-08 | 7 |
astrocyte | 1.09e-08 | 7 |
oligodendrocyte precursor cell | 1.09e-08 | 7 |
glial cell (sensu Vertebrata) | 8.45e-08 | 15 |
glial cell | 8.45e-08 | 15 |
glioblast | 8.45e-08 | 15 |
glioblast (sensu Vertebrata) | 8.45e-08 | 15 |
osteoblast | 2.26e-07 | 11 |
osteoprogenitor cell | 2.26e-07 | 11 |
mesenchyme condensation cell | 2.26e-07 | 11 |
mesenchymal stem cell of the bone marrow | 4.42e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 6.27e-14 | 371 |
musculoskeletal system | 2.35e-12 | 167 |
skeletal system | 1.79e-11 | 100 |
skeletal element | 1.43e-09 | 90 |
bone element | 3.97e-07 | 82 |
subdivision of skeletal system | 9.69e-07 | 16 |