FFCP PHASE1:Hg19::chr1:183208494..183208511,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3918 | |EntrezGene=3918 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6493 | |HGNC=6493 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-124bp_to_ENST00000461729_5end | |association_with_transcript=-124bp_to_ENST00000461729_5end | ||
|cluster_id=chr1:183208494..183208511,+ | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_9_at_LAMC2_5end | |description=CAGE_peak_9_at_LAMC2_5end | ||
|id=chr1:183208494..183208511,+ | |id=chr1:183208494..183208511,+ | ||
|ontology_enrichment_celltype=CL:0000066!9.17e-25!254;CL:0002076!8.97e-18!43;CL:0000223!7.21e-14!59;CL:0002159!1.08e-13!13;CL:0002368!1.12e-10!13;CL:0000244!2.04e-10!4;CL:0000731!2.04e-10!4;CL:0002621!7.92e-08!3;CL:0002328!9.48e-08!3;CL:0000362!1.68e-07!8;CL:0000622!1.82e-07!5;CL:0002077!2.13e-07!33;CL:0002231!2.19e-07!3;CL:0000220!4.50e-07!246;CL:0002321!6.24e-07!248;CL:0002541!7.03e-07!3;CL:0000076!9.12e-07!62;CL:0000240!9.50e-07!6;CL:0000311!9.50e-07!6;CL:0000079!9.50e-07!6;CL:0000237!9.50e-07!6;CL:0000036!9.50e-07!6;CL:0000357!9.50e-07!6;CL:0000114!9.50e-07!6 | |ontology_enrichment_celltype=CL:0000066!9.17e-25!254;CL:0002076!8.97e-18!43;CL:0000223!7.21e-14!59;CL:0002159!1.08e-13!13;CL:0002368!1.12e-10!13;CL:0000244!2.04e-10!4;CL:0000731!2.04e-10!4;CL:0002621!7.92e-08!3;CL:0002328!9.48e-08!3;CL:0000362!1.68e-07!8;CL:0000622!1.82e-07!5;CL:0002077!2.13e-07!33;CL:0002231!2.19e-07!3;CL:0000220!4.50e-07!246;CL:0002321!6.24e-07!248;CL:0002541!7.03e-07!3;CL:0000076!9.12e-07!62;CL:0000240!9.50e-07!6;CL:0000311!9.50e-07!6;CL:0000079!9.50e-07!6;CL:0000237!9.50e-07!6;CL:0000036!9.50e-07!6;CL:0000357!9.50e-07!6;CL:0000114!9.50e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000244;1.53e-32;4!CL:0000731;1.53e-32;4!CL:0002159;1.59e-27;14!CL:0000362;3.83e-22;9!CL:0002368;1.44e-21;13!CL:0002076;1.31e-17;42!CL:0000317;1.23e-16;2!CL:1000448;1.23e-16;2!CL:0002308;1.23e-16;2!CL:0002140;1.23e-16;2!CL:0000312;2.80e-15;5!CL:0000240;7.95e-13;6!CL:0000311;7.95e-13;6!CL:0000079;7.95e-13;6!CL:0000237;7.95e-13;6!CL:0002166;4.72e-12;3!CL:0002621;5.27e-12;3!CL:0002231;9.83e-12;3!CL:0002077;5.48e-10;34!CL:0000622;3.44e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,8.69e-33,4;CL:0000731,8.69e-33,4;CL:0002159,1.87e-27,14;CL:0000362,4.90e-22,9;CL:0002368,1.42e-21,13;CL:0002076,3.39e-21,42;CL:0000317,1.45e-16,2;CL:1000448,1.45e-16,2;CL:0002308,1.45e-16,2;CL:0002140,1.45e-16,2;CL:0000312,3.32e-15,5;CL:0000223,7.55e-15,58;CL:0000066,1.51e-14,253;CL:0000240,9.16e-13,6;CL:0000311,9.16e-13,6;CL:0000079,9.16e-13,6;CL:0000237,9.16e-13,6;CL:0000036,9.16e-13,6;CL:0000357,9.16e-13,6;CL:0000114,9.16e-13,6;CL:0002166,4.35e-12,3;CL:0002621,5.42e-12,3;CL:0002231,1.29e-11,3;CL:0002077,7.21e-11,34;CL:0002321,4.10e-08,250;CL:0000622,3.67e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000357;7.95e-13;6!CL:0000114;7.95e-13;6!CL:0000223;2.03e-09;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000365!2.71e-08!5;UBERON:0001949!7.92e-08!3;UBERON:0004815!9.48e-08!3;UBERON:0002031!9.48e-08!3;UBERON:0003124!2.16e-07!7;UBERON:0000476!7.03e-07!3;UBERON:0000920!7.03e-07!3;UBERON:0005910!7.09e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;4.22e-26;5!UBERON:0000486;5.77e-24;12!UBERON:0005910;8.41e-22;6!UBERON:0002419;1.23e-16;2!UBERON:0007771;1.23e-16;2!UBERON:0003297;1.23e-16;2!UBERON:0001821;1.23e-16;2!UBERON:0003487;1.23e-16;2!UBERON:0001820;1.23e-16;2!UBERON:0001003;3.02e-13;15!UBERON:0007376;3.02e-13;15!UBERON:0001949;5.27e-12;3!UBERON:0010371;8.41e-12;31!UBERON:0001708;2.94e-09;4!UBERON:0008895;2.94e-09;4!UBERON:0005911;2.78e-08;36!UBERON:0011159;1.43e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,2.69e-26,5;UBERON:0005910,5.79e-22,6;UBERON:0002419,1.45e-16,2;UBERON:0007771,1.45e-16,2;UBERON:0003297,1.45e-16,2;UBERON:0001821,1.45e-16,2;UBERON:0003487,1.45e-16,2;UBERON:0001820,1.45e-16,2;UBERON:0005089,1.45e-16,2;UBERON:0005088,1.45e-16,2;UBERON:0001003,3.49e-13,15;UBERON:0007376,3.49e-13,15;UBERON:0007383,3.49e-13,15;UBERON:0001949,5.42e-12,3;UBERON:0001708,2.77e-09,4;UBERON:0008895,2.77e-09,4;UBERON:0003102,5.10e-08,99;UBERON:0006554,1.25e-07,47;UBERON:0011159,1.36e-07,5;UBERON:0001008,1.87e-07,48;UBERON:0004119,2.86e-07,160;UBERON:0000925,2.86e-07,160;UBERON:0006595,2.86e-07,160 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.873765488520689,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.90361775633475,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0.560677600142307,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31913023795956,4.36393792945335,0.286804595389004,0,0,0.116193942869518,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08525542276389,2.24803506515239,2.51322431029077,0.925884451585296,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,7.72717789714754,2.55195175036296,0.53735113621709,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,3.40860999515584,1.10497186723076,0,0,0,0.451199612907412,0.385076685522074,0,0,0.422206515571503,0,0,0,1.54227252690289,0,0,0.509752546090077,0,0,0,0,0,0.328014645699706,0,0.309123034943167,0,0,1.14853107599234,1.30012049207304,0,0,0.154048617114644,0,0,0,0,0,0,3.63626813794152,2.69066094311149,1.02090169995667,1.4162089319777,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82822014178473,0,0,0.282431402330337,3.44404298136984,1.68471475667626,1.7737206141467,5.74308500517399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0.23056390438806,0.269272933229316,0,0.31900115973192,0.0915975934018623,1.06606955203727,0,0,0,0,0,0,0,0,1.26598838716816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0.489961987071888,0.174118413160805,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14405479798815,0.124252535565433,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415440338029185,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443511850813194,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.62164849248911,0.17071847709395,0,0,0,0,0,0.22910686854405,0,1.91107787795487,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0.235676547101626,0,0,0,0.169927114687817,0,0,0,0,0.705789743431384,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.0645889098360061,0,0.112131862580613,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p9@LAMC2 | |short_description=p9@LAMC2 | ||
}} | }} |
Latest revision as of 02:21, 19 September 2015
Short description: | p9@LAMC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LAMC2_5end |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | -124bp_to_ENST00000461729_5end |
EntrezGene: | LAMC2 |
HGNC: | 6493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 8.69e-33 | 4 |
urothelial cell | 8.69e-33 | 4 |
general ecto-epithelial cell | 1.87e-27 | 14 |
epidermal cell | 4.90e-22 | 9 |
respiratory epithelial cell | 1.42e-21 | 13 |
endo-epithelial cell | 3.39e-21 | 42 |
sebum secreting cell | 1.45e-16 | 2 |
epithelial cell of sweat gland | 1.45e-16 | 2 |
epithelial cell of skin gland | 1.45e-16 | 2 |
acinar cell of sebaceous gland | 1.45e-16 | 2 |
keratinocyte | 3.32e-15 | 5 |
endodermal cell | 7.55e-15 | 58 |
epithelial cell | 1.51e-14 | 253 |
stratified squamous epithelial cell | 9.16e-13 | 6 |
keratin accumulating cell | 9.16e-13 | 6 |
stratified epithelial cell | 9.16e-13 | 6 |
keratinizing barrier epithelial cell | 9.16e-13 | 6 |
epithelial fate stem cell | 9.16e-13 | 6 |
stratified epithelial stem cell | 9.16e-13 | 6 |
surface ectodermal cell | 9.16e-13 | 6 |
epithelial cell of Malassez | 4.35e-12 | 3 |
gingival epithelial cell | 5.42e-12 | 3 |
epithelial cell of prostate | 1.29e-11 | 3 |
ecto-epithelial cell | 7.21e-11 | 34 |
embryonic cell | 4.10e-08 | 250 |
acinar cell | 3.67e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
urothelium | 2.69e-26 | 5 |
transitional epithelium | 5.79e-22 | 6 |
skin gland | 1.45e-16 | 2 |
epidermis gland | 1.45e-16 | 2 |
gland of integumental system | 1.45e-16 | 2 |
sebaceous gland | 1.45e-16 | 2 |
skin sebaceous gland | 1.45e-16 | 2 |
sweat gland | 1.45e-16 | 2 |
sweat gland placode | 1.45e-16 | 2 |
sebaceous gland placode | 1.45e-16 | 2 |
skin epidermis | 3.49e-13 | 15 |
outer epithelium | 3.49e-13 | 15 |
enveloping layer of ectoderm | 3.49e-13 | 15 |
gingival epithelium | 5.42e-12 | 3 |
jaw skeleton | 2.77e-09 | 4 |
splanchnocranium | 2.77e-09 | 4 |
surface structure | 5.10e-08 | 99 |
urinary system structure | 1.25e-07 | 47 |
primary subdivision of cranial skeletal system | 1.36e-07 | 5 |
renal system | 1.87e-07 | 48 |
endoderm-derived structure | 2.86e-07 | 160 |
endoderm | 2.86e-07 | 160 |
presumptive endoderm | 2.86e-07 | 160 |