FFCP PHASE1:Hg19::chr14:22362614..22362619,+: Difference between revisions
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|id=chr14:22362614..22362619,+
|short_description=p1@TRAV8-4
|description=CAGE_peak_1_at_TRAV8-4_5end
|association_with_transcript=1bp_to_ENST00000390438_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12149 | |HGNC=12149 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=1bp_to_ENST00000390438_5end | |||
|cluster_id=chr14:22362614..22362619,+ | |||
|coexpression_cluster_id=C300 | |||
|description=CAGE_peak_1_at_TRAV8-4_5end | |||
|id=chr14:22362614..22362619,+ | |||
|ontology_enrichment_celltype=CL:0000898!1.31e-18!3;CL:0000624!4.33e-16!6;CL:0000791!3.71e-15!18;CL:0000789!3.71e-15!18;CL:0002420!3.71e-15!18;CL:0002419!3.71e-15!18;CL:0000790!3.71e-15!18;CL:0000084!7.13e-14!25;CL:0000827!7.13e-14!25;CL:0000815!9.05e-13!2;CL:0000792!9.05e-13!2;CL:0002677!9.05e-13!2;CL:0000810!1.44e-07!1;CL:0000895!1.44e-07!1;CL:0002436!1.44e-07!1;CL:0002427!1.44e-07!1;CL:0002428!1.44e-07!1;CL:0002429!1.44e-07!1;CL:0002433!1.44e-07!1;CL:0002431!1.44e-07!1;CL:0002432!1.44e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000895;4.22e-21;1!CL:0000898;6.34e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000810,5.16e-21,1;CL:0000895,5.16e-21,1;CL:0002436,5.16e-21,1;CL:0002427,5.16e-21,1;CL:0002428,5.16e-21,1;CL:0002429,5.16e-21,1;CL:0002433,5.16e-21,1;CL:0002431,5.16e-21,1;CL:0002432,5.16e-21,1;CL:0000893,3.35e-11,2;CL:0002489,3.35e-11,2;CL:0000809,3.35e-11,2;CL:0000808,3.35e-11,2;CL:0000894,3.35e-11,2;CL:0000806,3.35e-11,2;CL:0000807,3.35e-11,2;CL:0000805,3.35e-11,2;CL:0002425,3.35e-11,2;CL:0000898,6.78e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002427;4.22e-21;1!CL:0002425;3.02e-11;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!1.32e-14!4;UBERON:0005058!1.32e-14!4;UBERON:0009113!1.32e-14!4;UBERON:0003295!1.32e-14!4;UBERON:0005562!1.32e-14!4;UBERON:0004177!4.92e-14!7;UBERON:0001042!6.24e-10!10;UBERON:0009145!6.24e-10!10;UBERON:0003351!6.74e-10!6;UBERON:0000178!1.20e-09!15;UBERON:0000179!1.20e-09!15;UBERON:0000463!1.20e-09!15;UBERON:0006562!4.90e-09!11;UBERON:0002372!4.89e-07!1;UBERON:0001961!4.89e-07!1;UBERON:0001744!4.89e-07!1;UBERON:0001735!4.89e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.45e-40;2!UBERON:0005058;2.45e-40;2!UBERON:0009113;2.45e-40;2!UBERON:0004177;8.13e-17;5!UBERON:0005057;8.13e-17;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.03e-44,4;UBERON:0005058,1.03e-44,4;UBERON:0009113,1.03e-44,4;UBERON:0003295,1.03e-44,4;UBERON:0005562,1.03e-44,4;UBERON:0003351,4.15e-30,6;UBERON:0004177,6.29e-26,7;UBERON:0005057,6.29e-26,7;UBERON:0000974,2.19e-18,10;UBERON:0003408,2.19e-18,10;UBERON:0001042,2.19e-18,10;UBERON:0009145,2.19e-18,10;UBERON:0006562,8.80e-17,11;UBERON:0009722,8.80e-17,11;UBERON:0007690,8.80e-17,11;UBERON:0008814,1.61e-10,18;UBERON:0001557,5.35e-10,19;UBERON:0004807,5.70e-07,28;UBERON:0000077,9.50e-07,29 | |||
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|short_description=p1@TRAV8-4 | |||
}} | }} |
Latest revision as of 04:04, 19 September 2015
Short description: | p1@TRAV8-4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAV8-4_5end |
Coexpression cluster: | C300_CD4_CD8_NK_Natural_blood_mycosis_Basophils |
Association with transcript: | 1bp_to_ENST00000390438_5end |
EntrezGene: | NA |
HGNC: | 12149 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta thymocyte | 5.16e-21 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 5.16e-21 | 1 |
mature CD4 single-positive thymocyte | 5.16e-21 | 1 |
resting double-positive thymocyte | 5.16e-21 | 1 |
double-positive blast | 5.16e-21 | 1 |
CD69-positive double-positive thymocyte | 5.16e-21 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 5.16e-21 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 5.16e-21 | 1 |
CD24-positive, CD4 single-positive thymocyte | 5.16e-21 | 1 |
thymocyte | 3.35e-11 | 2 |
double negative thymocyte | 3.35e-11 | 2 |
double-positive, alpha-beta thymocyte | 3.35e-11 | 2 |
DN4 thymocyte | 3.35e-11 | 2 |
DN1 thymic pro-T cell | 3.35e-11 | 2 |
DN2 thymocyte | 3.35e-11 | 2 |
DN3 thymocyte | 3.35e-11 | 2 |
immature single positive thymocyte | 3.35e-11 | 2 |
early T lineage precursor | 3.35e-11 | 2 |
naive T cell | 6.78e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.03e-44 | 4 |
hemolymphoid system gland | 1.03e-44 | 4 |
thymic region | 1.03e-44 | 4 |
pharyngeal gland | 1.03e-44 | 4 |
thymus primordium | 1.03e-44 | 4 |
pharyngeal epithelium | 4.15e-30 | 6 |
hemopoietic organ | 6.29e-26 | 7 |
immune organ | 6.29e-26 | 7 |
neck | 2.19e-18 | 10 |
gland of gut | 2.19e-18 | 10 |
chordate pharynx | 2.19e-18 | 10 |
pharyngeal region of foregut | 2.19e-18 | 10 |
pharynx | 8.80e-17 | 11 |
entire pharyngeal arch endoderm | 8.80e-17 | 11 |
early pharyngeal endoderm | 8.80e-17 | 11 |
pharyngeal arch system | 1.61e-10 | 18 |
upper respiratory tract | 5.35e-10 | 19 |
respiratory system epithelium | 5.70e-07 | 28 |
mixed endoderm/mesoderm-derived structure | 9.50e-07 | 29 |