FFCP PHASE1:Hg19::chr1:76262552..76262588,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4438 | |EntrezGene=4438 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7327 | |HGNC=7327 | ||
|TSSclassifier=strong | |||
|UniProt=O15457 | |UniProt=O15457 | ||
|association_with_transcript=0bp_to_ENST00000263187,NM_002440_5end | |association_with_transcript=0bp_to_ENST00000263187,NM_002440_5end | ||
|cluster_id=chr1:76262552..76262588,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_MSH4_5end | |description=CAGE_peak_1_at_MSH4_5end | ||
|id=chr1:76262552..76262588,+ | |id=chr1:76262552..76262588,+ | ||
|ontology_enrichment_celltype=CL:0000064!7.60e-07!3;CL:0005012!7.60e-07!3;CL:0000067!7.60e-07!3;CL:0002304!7.60e-07!3 | |ontology_enrichment_celltype=CL:0000064!7.60e-07!3;CL:0005012!7.60e-07!3;CL:0000067!7.60e-07!3;CL:0002304!7.60e-07!3 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010122;3.43e-12;2!UBERON:0009117;6.20e-10;10!UBERON:0005564;6.20e-10;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;6.42e-23;4!DOID:1325;1.49e-13;7!DOID:3904;1.49e-13;7!DOID:4468;3.43e-12;2!DOID:3905;9.23e-11;9!DOID:1324;8.09e-07;15 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,6.42e-23,4;DOID:1325,1.49e-13,7;DOID:3904,1.49e-13,7;DOID:4468,3.62e-12,2;DOID:3905,9.23e-11,9;DOID:1324,8.09e-07,15 | |||
|ontology_enrichment_uberon=UBERON:0000369!1.27e-10!4;UBERON:0002435!1.27e-10!4;UBERON:0000204!1.27e-10!4;UBERON:0010082!1.27e-10!4;UBERON:0002240!4.17e-07!3;UBERON:0005383!5.16e-07!3;UBERON:0005382!5.16e-07!3;UBERON:0001778!7.60e-07!3;UBERON:0001775!7.60e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001873;3.43e-12;2!UBERON:0000473;3.54e-12;8!UBERON:0003135;4.08e-09;11!UBERON:0002369;1.08e-08;3!UBERON:0001235;1.08e-08;3!UBERON:0006858;1.08e-08;3!UBERON:0005383;1.46e-08;3!UBERON:0005382;1.46e-08;3!UBERON:0000369;9.90e-07;4!UBERON:0002435;9.90e-07;4!UBERON:0000204;9.90e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001873,3.24e-12,2;UBERON:0010122,3.24e-12,2;UBERON:0000473,3.54e-12,8;UBERON:0003135,4.08e-09,11;UBERON:0002369,1.04e-08,3;UBERON:0001235,1.04e-08,3;UBERON:0006858,1.04e-08,3;UBERON:0005383,1.40e-08,3;UBERON:0005382,1.40e-08,3;UBERON:0000369,9.63e-07,4;UBERON:0002435,9.63e-07,4;UBERON:0000204,9.63e-07,4;UBERON:0010082,9.63e-07,4 | |||
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| ||
|short_description=p1@MSH4 | |short_description=p1@MSH4 | ||
}} | }} |
Latest revision as of 06:09, 19 September 2015
Short description: | p1@MSH4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MSH4_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000263187, NM_002440_5end |
EntrezGene: | MSH4 |
HGNC: | 7327 |
UniProt: | O15457 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
caudate nucleus | 3.24e-12 | 2 |
future caudate nucleus | 3.24e-12 | 2 |
testis | 3.54e-12 | 8 |
male reproductive organ | 4.08e-09 | 11 |
adrenal gland | 1.04e-08 | 3 |
adrenal cortex | 1.04e-08 | 3 |
adrenal/interrenal gland | 1.04e-08 | 3 |
caudate-putamen | 1.40e-08 | 3 |
dorsal striatum | 1.40e-08 | 3 |
corpus striatum | 9.63e-07 | 4 |
striatum | 9.63e-07 | 4 |
ventral part of telencephalon | 9.63e-07 | 4 |
future corpus striatum | 9.63e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 6.42e-23 | 4 |
bronchus cancer | 1.49e-13 | 7 |
bronchogenic carcinoma | 1.49e-13 | 7 |
clear cell adenocarcinoma | 3.62e-12 | 2 |
lung carcinoma | 9.23e-11 | 9 |
lung cancer | 8.09e-07 | 15 |