FFCP PHASE1:Hg19::chr6:10556481..10556493,+: Difference between revisions
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|id=chr6:10556481..10556493,+
|short_description=p19@GCNT2
|description=CAGE_peak_19_at_GCNT2_5end
|association_with_transcript=241bp_to_ENST00000316170_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2651 | |EntrezGene=2651 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4204 | |HGNC=4204 | ||
|TSSclassifier=strong | |||
|UniProt=Q06430 | |UniProt=Q06430 | ||
|association_with_transcript=241bp_to_ENST00000316170_5end | |||
|cluster_id=chr6:10556481..10556493,+ | |||
|description=CAGE_peak_19_at_GCNT2_5end | |||
|id=chr6:10556481..10556493,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.26e-12!5;CL:0000540!2.49e-10!6;CL:0000031!2.49e-10!6;CL:0000404!2.49e-10!6;CL:0000047!1.30e-07!8;CL:0002144!1.87e-07!3;CL:0000064!3.55e-07!3;CL:0005012!3.55e-07!3;CL:0000067!3.55e-07!3;CL:0002304!3.55e-07!3;CL:0000133!9.46e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.68e-09;5!CL:0000540;6.83e-08;6!CL:0000404;6.83e-08;6!CL:0000039;5.26e-07;7!CL:0000586;5.26e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.57e-09,5;CL:0000540,6.16e-08,6;CL:0000031,6.16e-08,6;CL:0000404,6.16e-08,6;CL:0000039,6.20e-07,7;CL:0000586,6.20e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.13e-32;3!CL:0000031;6.83e-08;6 | |||
|ontology_enrichment_disease=DOID:3095!7.07e-07!22;DOID:2994!7.07e-07!22 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.60e-34!94;UBERON:0001016!9.60e-34!94;UBERON:0001017!3.12e-33!82;UBERON:0005743!6.87e-33!86;UBERON:0001049!1.22e-27!57;UBERON:0005068!1.22e-27!57;UBERON:0006241!1.22e-27!57;UBERON:0007135!1.22e-27!57;UBERON:0002616!1.63e-26!59;UBERON:0000955!3.41e-26!69;UBERON:0006238!3.41e-26!69;UBERON:0003075!5.90e-26!86;UBERON:0007284!5.90e-26!86;UBERON:0002346!2.43e-24!90;UBERON:0003056!2.44e-23!61;UBERON:0002780!3.55e-23!41;UBERON:0001890!3.55e-23!41;UBERON:0006240!3.55e-23!41;UBERON:0003080!1.77e-22!42;UBERON:0001893!1.72e-21!34;UBERON:0004121!5.10e-21!169;UBERON:0001869!5.93e-21!32;UBERON:0000153!2.66e-20!129;UBERON:0007811!2.66e-20!129;UBERON:0000924!3.17e-20!173;UBERON:0006601!3.17e-20!173;UBERON:0002791!3.61e-20!33;UBERON:0002020!1.29e-19!34;UBERON:0003528!1.29e-19!34;UBERON:0000033!2.08e-19!123;UBERON:0007023!6.98e-19!115;UBERON:0002619!4.67e-18!22;UBERON:0001950!3.61e-17!20;UBERON:0000956!1.61e-15!25;UBERON:0000203!1.61e-15!25;UBERON:0000200!1.16e-08!6;UBERON:0001915!1.87e-07!3;UBERON:0001982!1.87e-07!3;UBERON:0002771!1.95e-07!3;UBERON:0000922!2.22e-07!612;UBERON:0001872!3.43e-07!5;UBERON:0001778!3.55e-07!3;UBERON:0001775!3.55e-07!3;UBERON:0001871!5.75e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.85e-16;6!UBERON:0002680;3.61e-11;9!UBERON:0001895;3.61e-11;9!UBERON:0000922;6.74e-09;49!UBERON:0004733;1.66e-08;12!UBERON:0002028;1.66e-08;12!UBERON:0004732;6.86e-08;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.38e-16,6;UBERON:0006215,1.38e-16,6;UBERON:0002680,2.99e-11,9;UBERON:0001895,2.99e-11,9;UBERON:0010092,2.99e-11,9;UBERON:0004733,1.44e-08,12;UBERON:0002028,1.44e-08,12;UBERON:0007277,1.44e-08,12;UBERON:0004732,6.03e-08,13;UBERON:0001017,3.23e-07,81;UBERON:0003076,5.99e-07,15;UBERON:0003057,5.99e-07,15 | |||
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| ||
|short_description=p19@GCNT2 | |||
}} | }} |
Latest revision as of 14:04, 19 September 2015
Short description: | p19@GCNT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_GCNT2_5end |
Coexpression cluster: | NA |
Association with transcript: | 241bp_to_ENST00000316170_5end |
EntrezGene: | GCNT2 |
HGNC: | 4204 |
UniProt: | Q06430 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.57e-09 | 5 |
neuron | 6.16e-08 | 6 |
neuroblast | 6.16e-08 | 6 |
electrically signaling cell | 6.16e-08 | 6 |
germ line cell | 6.20e-07 | 7 |
germ cell | 6.20e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.38e-16 | 6 |
rhombic lip | 1.38e-16 | 6 |
regional part of metencephalon | 2.99e-11 | 9 |
metencephalon | 2.99e-11 | 9 |
future metencephalon | 2.99e-11 | 9 |
segmental subdivision of hindbrain | 1.44e-08 | 12 |
hindbrain | 1.44e-08 | 12 |
presumptive hindbrain | 1.44e-08 | 12 |
segmental subdivision of nervous system | 6.03e-08 | 13 |
central nervous system | 3.23e-07 | 81 |
posterior neural tube | 5.99e-07 | 15 |
chordal neural plate | 5.99e-07 | 15 |