FFCP PHASE1:Hg19::chr2:20425480..20425493,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6382 | |EntrezGene=6382 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10658 | |HGNC=10658 | ||
|TSSclassifier=strong | |||
|UniProt=P18827 | |UniProt=P18827 | ||
|association_with_transcript=-286bp_to_ENST00000381150,NM_001006946,uc002rdp.1_5end | |association_with_transcript=-286bp_to_ENST00000381150,NM_001006946,uc002rdp.1_5end | ||
|cluster_id=chr2:20425480..20425493,- | |||
|description=CAGE_peak_8_at_SDC1_5end | |description=CAGE_peak_8_at_SDC1_5end | ||
|id=chr2:20425480..20425493,- | |id=chr2:20425480..20425493,- | ||
|ontology_enrichment_celltype=CL:0002076!1.46e-19!43;CL:0000066!7.80e-16!254;CL:0000223!8.64e-14!59;CL:0002368!3.47e-11!13;CL:0002251!1.39e-09!21;CL:0002202!2.60e-08!9;CL:0002632!2.60e-08!9;CL:0002321!1.34e-07!248;CL:0000220!4.10e-07!246;CL:0000221!5.97e-07!71;CL:0002077!7.36e-07!33 | |ontology_enrichment_celltype=CL:0002076!1.46e-19!43;CL:0000066!7.80e-16!254;CL:0000223!8.64e-14!59;CL:0002368!3.47e-11!13;CL:0002251!1.39e-09!21;CL:0002202!2.60e-08!9;CL:0002632!2.60e-08!9;CL:0002321!1.34e-07!248;CL:0000220!4.10e-07!246;CL:0000221!5.97e-07!71;CL:0002077!7.36e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0002368;7.27e-13;13!CL:0002076;8.61e-13;42!CL:0002159;2.64e-12;14!CL:0002202;3.21e-11;9!CL:0002632;3.21e-11;9!CL:0002621;2.85e-10;3!CL:0002328;1.40e-09;3!CL:0000307;2.44e-09;3!CL:0002077;2.37e-07;34!CL:0002327;2.77e-07;4!CL:0000575;3.40e-07;2!CL:0000244;7.88e-07;4!CL:0000731;7.88e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.30e-16,42;CL:0002368,6.73e-13,13;CL:0002159,2.32e-12,14;CL:0002202,2.67e-11,9;CL:0002632,2.67e-11,9;CL:0000066,8.62e-11,253;CL:0000223,2.17e-10,58;CL:0002621,2.83e-10,3;CL:0002328,8.48e-10,3;CL:0000068,3.01e-09,3;CL:0000069,3.01e-09,3;CL:0000307,3.01e-09,3;CL:0000377,3.01e-09,3;CL:0002077,5.79e-08,34;CL:0002327,2.21e-07,4;CL:0000575,3.75e-07,2;CL:0000244,8.09e-07,4;CL:0000731,8.09e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000377;2.44e-09;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.10e-12!169;UBERON:0000925!1.10e-12!169;UBERON:0006595!1.10e-12!169;UBERON:0000161!5.95e-11!35;UBERON:0001004!6.93e-10!72;UBERON:0003102!9.44e-10!95;UBERON:0001007!4.34e-09!155;UBERON:0001555!4.34e-09!155;UBERON:0007026!4.34e-09!155;UBERON:0000464!8.90e-09!104;UBERON:0001444!9.41e-09!48;UBERON:0000166!1.37e-08!21;UBERON:0000165!1.76e-08!28;UBERON:0000930!1.76e-08!28;UBERON:0000475!6.80e-08!365;UBERON:0000466!9.05e-08!126;UBERON:0000077!3.09e-07!130;UBERON:0007196!8.16e-07!14;UBERON:0001558!8.16e-07!14 | |ontology_enrichment_uberon=UBERON:0004119!1.10e-12!169;UBERON:0000925!1.10e-12!169;UBERON:0006595!1.10e-12!169;UBERON:0000161!5.95e-11!35;UBERON:0001004!6.93e-10!72;UBERON:0003102!9.44e-10!95;UBERON:0001007!4.34e-09!155;UBERON:0001555!4.34e-09!155;UBERON:0007026!4.34e-09!155;UBERON:0000464!8.90e-09!104;UBERON:0001444!9.41e-09!48;UBERON:0000166!1.37e-08!21;UBERON:0000165!1.76e-08!28;UBERON:0000930!1.76e-08!28;UBERON:0000475!6.80e-08!365;UBERON:0000466!9.05e-08!126;UBERON:0000077!3.09e-07!130;UBERON:0007196!8.16e-07!14;UBERON:0001558!8.16e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;2.85e-10;3!UBERON:0004815;1.40e-09;3!UBERON:0002031;1.40e-09;3!UBERON:0007196;1.63e-08;15!UBERON:0001558;1.63e-08;15!UBERON:0000486;2.29e-08;12!UBERON:0000165;3.45e-08;28!UBERON:0001911;2.77e-07;4!UBERON:0002294;8.44e-07;7!UBERON:0001173;8.44e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.55e-11,99;UBERON:0004119,1.60e-11,160;UBERON:0000925,1.60e-11,160;UBERON:0006595,1.60e-11,160;UBERON:0000161,2.16e-10,36;UBERON:0001949,2.83e-10,3;UBERON:0001004,3.53e-10,74;UBERON:0004815,8.48e-10,3;UBERON:0002031,8.48e-10,3;UBERON:0001007,6.08e-09,145;UBERON:0001555,6.08e-09,145;UBERON:0007026,6.08e-09,145;UBERON:0000166,9.89e-09,22;UBERON:0007196,1.19e-08,15;UBERON:0001558,1.19e-08,15;UBERON:0000153,4.55e-08,62;UBERON:0007811,4.55e-08,62;UBERON:0000033,5.07e-08,56;UBERON:0000165,9.10e-08,29;UBERON:0000930,9.10e-08,29;UBERON:0001911,2.21e-07,4;UBERON:0005333,2.21e-07,4;UBERON:0008425,2.21e-07,4;UBERON:0005311,2.21e-07,4;UBERON:0001041,6.66e-07,87 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0.873765488520689,0.527533956456907,0,0,0,0,0,0.975865597581014,0.492484232307152,0.408001382488506,0,0.572471974262113,0.136874425072884,0,0,0.0821005894499457,0.0787107813136792,0,0,0,4.59710612239464,3.0120591877825,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0,0.263504357079378,2.0956652079634,5.82872461268068,2.22470665670658,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,1.74437620857014,0,0.12663051166458,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0.234321431833797,0.312160076830321,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0.168336113954066,0.125118519871964,0,0.438977620880838,0,0,0.113432183160021,0.358779271377724,0,0,0.300091096084402,0.412210116953756,0,0,0.506328996723799,0.0974370051611986,0,0.184099797284599,0.484938170456436,0.355009592516614,0,0.169560592310488,6.3776081543888,3.81844568827169,6.59650569394709,0.487894824518382,0.530119073285941,0.116193942869518,0.725627385107593,0,0.72995471815166,0,0.643240938192885,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0.983907508344908,0.171567810298526,5.92651541206578,0,5.42856451022807,2.22212268380471,0,0,0,0,0.117408694235822,0,0,0,0,1.71697232418975,0,0,0,6.56136837907439,0.839910640994298,1.98485136139341,1.70161193135412,2.3250715081117,8.05103626246943,0,0,0.207328115540772,0,0,0.190493682876507,0,0,0,0.308482478109971,1.50171528921959,1.14330573052231,0.897048674762886,0,0.22001485746285,0.129271715757778,0,0,0.797814349754612,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0.12269149171914,0.500170521059677,0.271265023699736,0.207970861530807,0,0.157702415033935,0,0,0,0,0,0,0.347534457872331,0.391602314925481,0,0,0,0,0.303127571446259,0,0.604780586659361,0,0,0,0.128139149255701,0.511707249066704,0,0,0.308419387605311,2.30830242907065,0.98552587216571,1.03850885836724,0.697262270759755,0.362578348774867,4.81215528727884,6.81399318125633,0,0,0,0,0.385076685522074,0.784349769176855,0,0.211103257785751,0,0,0,0,0.270946437543853,0,0.509752546090077,1.66215201785745,0.223874754722178,0,0,0.256450125116389,0,0,0.309123034943167,0,0.082509499920588,1.14853107599234,1.30012049207304,0,0.290012154876366,0,0,0,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0.826424576804891,1.15314040419064,0.638063562472921,1.31505115112215,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0.511795582622668,0,0.318203247925937,0,0,0,0.235624804691373,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0.379473173765715,0.349934720244983,2.11688647996127,1.34060455107157,2.17781969722645,0,2.58303223602738,0,1.33029046061003,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0.568272293612826,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0.269605053441981,1.07412704805365,0,0.690503839458535,0,0,0,0,0,0,0.962059999958153,0.724999575434793,0.227586896570999,0.254253650292766,0.236387681767936,0.689486746482929,0,0,0,0.120596438625408,0,0.110579259931225,0.295547618953547,0,0,1.11538995422883,0.692552326534174,0,0,0.0897576444097721,0.217294743844016,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0.586993856796269,0,0.394584402849391,0,0.61214552326098,0,0,0,0,0,0,0,0.284609546029793,0,0.173559738335131,1.27390116638691,0.174118413160805,1.04836000945218,0,0,0.0730893170861856,0,2.61870344518732,0.0882561266915003,0.677942222341597,0,0,0,1.56441106187842,0.0801588202515337,11.3130087211857,0,0.432271251462318,0,0,0,0,1.17847017308398,0.135904206073614,0.104602846312333,0.101998217636322,0.288950589901519,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0.551482276150566,0.164831716762333,0.0674035438541849,0,0,0,0,0.482259445395058,0.550157746388935,0,0,0,0,1.0063040627978,6.06803946203826,1.25891011523995,0,0,0.383830394638891,0,0,0,0,0,0.326587360109409,0,0,0.511164065356265,0,0.439656701034247,0,0.129282956361551,0,0,1.40963004463334,0.320362237703084,0.78602152549833,0,0.496166021811951,0.197611631897944,0,0.638341257770182,0,0,0,0,4.55456879125679,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0.15543720058278,0.295710299979268,0,0.449803112163605,0,0,0.265841714557995,0,0,0,0,1.09109195521536,0,0,1.19428766609585,0,0.343395705182793,0,1.26184898228651,0,0,0,0,0,0,0.179088841081487,0.308801447160972,0,0.353378291891762,0,0,0.256241518587947,0,0,0,0,0,0,0,0,2.53574548030352,0,0,0,0,0,1.67855409263333,0.622077260032973,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785181748008205,0.825788063434183,0.733714394086716,0.34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| ||
|short_description=p8@SDC1 | |short_description=p8@SDC1 | ||
}} | }} |
Latest revision as of 15:45, 19 September 2015
Short description: | p8@SDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SDC1_5end |
Coexpression cluster: | NA |
Association with transcript: | -286bp_to_ENST00000381150, NM_001006946, uc002rdp.1_5end |
EntrezGene: | SDC1 |
HGNC: | 10658 |
UniProt: | P18827 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 5.30e-16 | 42 |
respiratory epithelial cell | 6.73e-13 | 13 |
general ecto-epithelial cell | 2.32e-12 | 14 |
epithelial cell of tracheobronchial tree | 2.67e-11 | 9 |
epithelial cell of lower respiratory tract | 2.67e-11 | 9 |
epithelial cell | 8.62e-11 | 253 |
endodermal cell | 2.17e-10 | 58 |
gingival epithelial cell | 2.83e-10 | 3 |
bronchial epithelial cell | 8.48e-10 | 3 |
duct epithelial cell | 3.01e-09 | 3 |
branched duct epithelial cell | 3.01e-09 | 3 |
tracheal epithelial cell | 3.01e-09 | 3 |
tracheoblast | 3.01e-09 | 3 |
ecto-epithelial cell | 5.79e-08 | 34 |
mammary gland epithelial cell | 2.21e-07 | 4 |
corneal epithelial cell | 3.75e-07 | 2 |
transitional epithelial cell | 8.09e-07 | 4 |
urothelial cell | 8.09e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.55e-11 | 99 |
endoderm-derived structure | 1.60e-11 | 160 |
endoderm | 1.60e-11 | 160 |
presumptive endoderm | 1.60e-11 | 160 |
orifice | 2.16e-10 | 36 |
gingival epithelium | 2.83e-10 | 3 |
respiratory system | 3.53e-10 | 74 |
lower respiratory tract epithelium | 8.48e-10 | 3 |
epithelium of bronchus | 8.48e-10 | 3 |
digestive system | 6.08e-09 | 145 |
digestive tract | 6.08e-09 | 145 |
primitive gut | 6.08e-09 | 145 |
oral opening | 9.89e-09 | 22 |
tracheobronchial tree | 1.19e-08 | 15 |
lower respiratory tract | 1.19e-08 | 15 |
anterior region of body | 4.55e-08 | 62 |
craniocervical region | 4.55e-08 | 62 |
head | 5.07e-08 | 56 |
mouth | 9.10e-08 | 29 |
stomodeum | 9.10e-08 | 29 |
mammary gland | 2.21e-07 | 4 |
mammary bud | 2.21e-07 | 4 |
mammary ridge | 2.21e-07 | 4 |
mammary placode | 2.21e-07 | 4 |
foregut | 6.66e-07 | 87 |