FFCP PHASE1:Hg19::chr3:113616338..113616364,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54762 | |EntrezGene=54762 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25252 | |HGNC=25252 | ||
|TSSclassifier=strong | |||
|UniProt=C9K0V2 | |UniProt=C9K0V2 | ||
|association_with_transcript=0bp_to_ENST00000488680_5end | |association_with_transcript=0bp_to_ENST00000488680_5end | ||
|cluster_id=chr3:113616338..113616364,+ | |||
|description=CAGE_peak_2_at_GRAMD1C_5end | |description=CAGE_peak_2_at_GRAMD1C_5end | ||
|id=chr3:113616338..113616364,+ | |id=chr3:113616338..113616364,+ | ||
|ontology_enrichment_celltype=CL:0000223!1.84e-09!59;CL:0002076!1.82e-08!43;CL:0002251!3.38e-08!21 | |ontology_enrichment_celltype=CL:0000223!1.84e-09!59;CL:0002076!1.82e-08!43;CL:0002251!3.38e-08!21 | ||
|ontology_enrichment_celltype_v019=CL:0002541;8.64e-07;3 | |ontology_enrichment_celltype_v019=CL:0002541;8.64e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002541,8.74e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006595;2.02e-12;86 | |ontology_enrichment_development_v019=UBERON:0006595;2.02e-12;86 | ||
|ontology_enrichment_disease=DOID:305!3.92e-12!106;DOID:299!1.14e-08!25;DOID:1749!1.59e-08!14;DOID:0050687!2.88e-08!143 | |ontology_enrichment_disease=DOID:305!3.92e-12!106;DOID:299!1.14e-08!25;DOID:1749!1.59e-08!14;DOID:0050687!2.88e-08!143 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.46e-12;14 | |ontology_enrichment_disease_v019=DOID:1749;1.46e-12;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,1.48e-12,14;DOID:305,4.62e-12,106;DOID:0050687,9.34e-10,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.80e-21!115;UBERON:0004119!1.73e-17!169;UBERON:0000925!1.73e-17!169;UBERON:0006595!1.73e-17!169;UBERON:0001007!2.45e-17!155;UBERON:0001555!2.45e-17!155;UBERON:0007026!2.45e-17!155;UBERON:0004921!1.41e-16!129;UBERON:0004185!1.41e-16!129;UBERON:0000077!6.29e-13!130;UBERON:0005409!7.37e-10!35;UBERON:0001041!1.48e-09!98;UBERON:0000062!5.53e-08!511;UBERON:0000161!8.21e-08!35;UBERON:0000160!1.64e-07!27;UBERON:0000974!1.86e-07!10;UBERON:0001004!4.76e-07!72;UBERON:0000466!4.91e-07!126;UBERON:0005911!5.60e-07!82 | |ontology_enrichment_uberon=UBERON:0007023!6.80e-21!115;UBERON:0004119!1.73e-17!169;UBERON:0000925!1.73e-17!169;UBERON:0006595!1.73e-17!169;UBERON:0001007!2.45e-17!155;UBERON:0001555!2.45e-17!155;UBERON:0007026!2.45e-17!155;UBERON:0004921!1.41e-16!129;UBERON:0004185!1.41e-16!129;UBERON:0000077!6.29e-13!130;UBERON:0005409!7.37e-10!35;UBERON:0001041!1.48e-09!98;UBERON:0000062!5.53e-08!511;UBERON:0000161!8.21e-08!35;UBERON:0000160!1.64e-07!27;UBERON:0000974!1.86e-07!10;UBERON:0001004!4.76e-07!72;UBERON:0000466!4.91e-07!126;UBERON:0005911!5.60e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;6.84e-15;33!UBERON:0005409;2.62e-12;22!UBERON:0000160;8.57e-12;17!UBERON:0000974;1.15e-11;6!UBERON:0001555;1.21e-08;54!UBERON:0003343;1.87e-08;4!UBERON:0004785;1.87e-08;4!UBERON:0001007;1.58e-07;81!UBERON:0002108;2.07e-07;4!UBERON:0002294;4.47e-07;7!UBERON:0001173;4.47e-07;7!UBERON:0003124;8.64e-07;3!UBERON:0000920;8.64e-07;3!UBERON:0000058;9.90e-07;10 | |ontology_enrichment_uberon_v019=UBERON:0004921;6.84e-15;33!UBERON:0005409;2.62e-12;22!UBERON:0000160;8.57e-12;17!UBERON:0000974;1.15e-11;6!UBERON:0001555;1.21e-08;54!UBERON:0003343;1.87e-08;4!UBERON:0004785;1.87e-08;4!UBERON:0001007;1.58e-07;81!UBERON:0002108;2.07e-07;4!UBERON:0002294;4.47e-07;7!UBERON:0001173;4.47e-07;7!UBERON:0003124;8.64e-07;3!UBERON:0000920;8.64e-07;3!UBERON:0000058;9.90e-07;10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,2.14e-20,145;UBERON:0001555,2.14e-20,145;UBERON:0007026,2.14e-20,145;UBERON:0004119,2.39e-18,160;UBERON:0000925,2.39e-18,160;UBERON:0006595,2.39e-18,160;UBERON:0004921,9.28e-18,118;UBERON:0000160,8.15e-12,17;UBERON:0005409,1.43e-10,25;UBERON:0007023,3.95e-10,114;UBERON:0001041,3.76e-09,87;UBERON:0003343,2.20e-08,4;UBERON:0004785,2.20e-08,4;UBERON:0001004,9.00e-08,74;UBERON:0000161,1.45e-07,36;UBERON:0002108,1.90e-07,4;UBERON:0000166,2.12e-07,22;UBERON:0005911,3.76e-07,82;UBERON:0005177,3.98e-07,101;UBERON:0000920,8.74e-07,3 | |||
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| ||
|short_description=p2@GRAMD1C | |short_description=p2@GRAMD1C | ||
}} | }} |
Latest revision as of 16:25, 19 September 2015
Short description: | p2@GRAMD1C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GRAMD1C_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000488680_5end |
EntrezGene: | GRAMD1C |
HGNC: | 25252 |
UniProt: | C9K0V2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 8.74e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
digestive system | 2.14e-20 | 145 |
digestive tract | 2.14e-20 | 145 |
primitive gut | 2.14e-20 | 145 |
endoderm-derived structure | 2.39e-18 | 160 |
endoderm | 2.39e-18 | 160 |
presumptive endoderm | 2.39e-18 | 160 |
subdivision of digestive tract | 9.28e-18 | 118 |
intestine | 8.15e-12 | 17 |
gastrointestinal system | 1.43e-10 | 25 |
adult organism | 3.95e-10 | 114 |
foregut | 3.76e-09 | 87 |
mucosa of oral region | 2.20e-08 | 4 |
respiratory system mucosa | 2.20e-08 | 4 |
respiratory system | 9.00e-08 | 74 |
orifice | 1.45e-07 | 36 |
small intestine | 1.90e-07 | 4 |
oral opening | 2.12e-07 | 22 |
endo-epithelium | 3.76e-07 | 82 |
trunk region element | 3.98e-07 | 101 |
egg chorion | 8.74e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.48e-12 | 14 |
carcinoma | 4.62e-12 | 106 |
cell type cancer | 9.34e-10 | 143 |