FFCP PHASE1:Hg19::chr1:93646238..93646298,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=343099 | |EntrezGene=343099 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30370 | |HGNC=30370 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T9S5,E9PFB9,Q6PH87 | |UniProt=Q5T9S5,E9PFB9,Q6PH87 | ||
|association_with_transcript=0bp_to_ENST00000370276,ENST00000448243,NM_206886_5end | |association_with_transcript=0bp_to_ENST00000370276,ENST00000448243,NM_206886_5end | ||
|cluster_id=chr1:93646238..93646298,+ | |||
|coexpression_cluster_id=C2388 | |||
|description=CAGE_peak_1_at_CCDC18_5end | |description=CAGE_peak_1_at_CCDC18_5end | ||
|id=chr1:93646238..93646298,+ | |id=chr1:93646238..93646298,+ | ||
|ontology_enrichment_celltype=CL:0000037!5.16e-16!172;CL:0000566!5.16e-16!172;CL:0002032!4.53e-15!165;CL:0000837!4.53e-15!165;CL:0000988!5.82e-15!182;CL:0000945!2.32e-10!24;CL:0000826!2.32e-10!24;CL:0000542!1.62e-08!53;CL:0000051!1.62e-08!53;CL:0002031!2.85e-08!124;CL:0000838!4.53e-08!52;CL:0000003!5.04e-08!722;CL:0000763!1.38e-07!112;CL:0000049!1.38e-07!112;CL:0002087!1.59e-07!119;CL:0000219!7.76e-07!390 | |ontology_enrichment_celltype=CL:0000037!5.16e-16!172;CL:0000566!5.16e-16!172;CL:0002032!4.53e-15!165;CL:0000837!4.53e-15!165;CL:0000988!5.82e-15!182;CL:0000945!2.32e-10!24;CL:0000826!2.32e-10!24;CL:0000542!1.62e-08!53;CL:0000051!1.62e-08!53;CL:0002031!2.85e-08!124;CL:0000838!4.53e-08!52;CL:0000003!5.04e-08!722;CL:0000763!1.38e-07!112;CL:0000049!1.38e-07!112;CL:0002087!1.59e-07!119;CL:0000219!7.76e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.27e-10;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.19e-15,168;CL:0000988,1.76e-14,177;CL:0002032,1.92e-14,161;CL:0000837,1.92e-14,161;CL:0000945,1.59e-10,24;CL:0000826,1.59e-10,24;CL:0000542,1.86e-08,53;CL:0000051,1.86e-08,53;CL:0000838,5.26e-08,52;CL:0002031,1.61e-07,120;CL:0000763,4.06e-07,108;CL:0000049,4.06e-07,108;CL:0002087,8.63e-07,115 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!6.66e-31!235;DOID:14566!1.07e-29!239;DOID:2531!1.72e-25!51;DOID:0060083!1.72e-25!51;DOID:1240!4.18e-21!39;DOID:0050686!1.37e-17!137;DOID:8692!2.15e-17!31;DOID:0050687!1.48e-10!143;DOID:305!2.78e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.93e-17;31!DOID:1240;5.07e-17;39!DOID:2531;4.76e-16;51!DOID:0060083;4.76e-16;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.82e-31,235;DOID:14566,1.20e-29,239;DOID:2531,6.15e-26,51;DOID:0060083,6.15e-26,51;DOID:1240,1.81e-21,39;DOID:8692,1.09e-17,31;DOID:0050686,1.58e-17,137;DOID:0050687,1.15e-10,143;DOID:305,2.42e-08,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p1@CCDC18 | |short_description=p1@CCDC18 | ||
}} | }} |
Latest revision as of 21:28, 19 September 2015
Short description: | p1@CCDC18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCDC18_5end |
Coexpression cluster: | C2388_granulocyte_non_Hodgkin_Burkitt_acute_Reticulocytes_embryonic |
Association with transcript: | 0bp_to_ENST00000370276, ENST00000448243, NM_206886_5end |
EntrezGene: | CCDC18 |
HGNC: | 30370 |
UniProt: | Q5T9S5E9PFB9Q6PH87 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.19e-15 | 168 |
hematopoietic cell | 1.76e-14 | 177 |
hematopoietic oligopotent progenitor cell | 1.92e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.92e-14 | 161 |
lymphocyte of B lineage | 1.59e-10 | 24 |
pro-B cell | 1.59e-10 | 24 |
lymphocyte | 1.86e-08 | 53 |
common lymphoid progenitor | 1.86e-08 | 53 |
lymphoid lineage restricted progenitor cell | 5.26e-08 | 52 |
hematopoietic lineage restricted progenitor cell | 1.61e-07 | 120 |
myeloid cell | 4.06e-07 | 108 |
common myeloid progenitor | 4.06e-07 | 108 |
nongranular leukocyte | 8.63e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.82e-31 | 235 |
disease of cellular proliferation | 1.20e-29 | 239 |
hematologic cancer | 6.15e-26 | 51 |
immune system cancer | 6.15e-26 | 51 |
leukemia | 1.81e-21 | 39 |
myeloid leukemia | 1.09e-17 | 31 |
organ system cancer | 1.58e-17 | 137 |
cell type cancer | 1.15e-10 | 143 |
carcinoma | 2.42e-08 | 106 |