FFCP PHASE1:Hg19::chr9:104296243..104296258,+: Difference between revisions
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|id=chr9:104296243..104296258,+
|short_description=p15@RNF20
|description=CAGE_peak_15_at_RNF20_5end
|association_with_transcript=-2bp_to_ENST00000466817_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56254 | |EntrezGene=56254 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10062 | |HGNC=10062 | ||
|TSSclassifier=strong | |||
|UniProt=C9J0A5 | |UniProt=C9J0A5 | ||
|association_with_transcript=-2bp_to_ENST00000466817_5end | |||
|cluster_id=chr9:104296243..104296258,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_15_at_RNF20_5end | |||
|id=chr9:104296243..104296258,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002601;2.70e-40;1!CL:0000306;3.60e-11;4!CL:0002222;3.60e-11;4!CL:0002224;3.60e-11;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002601,3.30e-40,1;CL:0000306,3.42e-11,4;CL:0002222,3.42e-11,4;CL:0002224,3.42e-11,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.90e-17;10!UBERON:0005564;5.90e-17;10 | |||
|ontology_enrichment_disease=DOID:14566!7.52e-08!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.64e-21;8!UBERON:0003135;1.62e-15;11!UBERON:0010077;3.60e-11;4!UBERON:0005389;3.60e-11;4!UBERON:0000484;3.60e-11;4!UBERON:0000965;3.60e-11;4!UBERON:0001803;3.60e-11;4!UBERON:0000991;1.27e-08;21!UBERON:0003101;2.82e-08;22!UBERON:0000079;2.82e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.64e-21,8;UBERON:0003135,1.62e-15,11;UBERON:0010077,3.42e-11,4;UBERON:0005389,3.42e-11,4;UBERON:0000484,3.42e-11,4;UBERON:0002546,3.42e-11,4;UBERON:0000965,3.42e-11,4;UBERON:0001803,3.42e-11,4;UBERON:0003073,3.42e-11,4;UBERON:0005426,3.42e-11,4;UBERON:0000991,1.27e-08,21;UBERON:0009196,1.27e-08,21;UBERON:0009117,1.27e-08,21;UBERON:0005564,1.27e-08,21;UBERON:0004176,2.82e-08,22;UBERON:0003101,2.82e-08,22;UBERON:0000079,2.82e-08,22;UBERON:0003133,3.04e-08,48;UBERON:0005156,7.68e-07,59;UBERON:0000990,7.68e-07,59 | |||
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| ||
|short_description=p15@RNF20 | |||
}} | }} |
Latest revision as of 22:07, 19 September 2015
Short description: | p15@RNF20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_RNF20_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -2bp_to_ENST00000466817_5end |
EntrezGene: | RNF20 |
HGNC: | 10062 |
UniProt: | C9J0A5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
uterine smooth muscle cell | 3.30e-40 | 1 |
crystallin accumulating cell | 3.42e-11 | 4 |
vertebrate lens cell | 3.42e-11 | 4 |
lens epithelial cell | 3.42e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
testis | 6.64e-21 | 8 |
male reproductive organ | 1.62e-15 | 11 |
cuboidal epithelium | 3.42e-11 | 4 |
transparent eye structure | 3.42e-11 | 4 |
simple cuboidal epithelium | 3.42e-11 | 4 |
cranial placode | 3.42e-11 | 4 |
lens of camera-type eye | 3.42e-11 | 4 |
epithelium of lens | 3.42e-11 | 4 |
lens placode | 3.42e-11 | 4 |
lens vesicle | 3.42e-11 | 4 |
gonad | 1.27e-08 | 21 |
indifferent external genitalia | 1.27e-08 | 21 |
indifferent gonad | 1.27e-08 | 21 |
gonad primordium | 1.27e-08 | 21 |
external genitalia | 2.82e-08 | 22 |
male organism | 2.82e-08 | 22 |
male reproductive system | 2.82e-08 | 22 |
reproductive organ | 3.04e-08 | 48 |
reproductive structure | 7.68e-07 | 59 |
reproductive system | 7.68e-07 | 59 |