FFCP PHASE1:Hg19::chr1:204494323..204494353,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4194 | |EntrezGene=4194 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6974 | |HGNC=6974 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_uc009xbe.1_5end | |association_with_transcript=-14bp_to_uc009xbe.1_5end | ||
|cluster_id=chr1:204494323..204494353,+ | |||
|coexpression_cluster_id=C28 | |coexpression_cluster_id=C28 | ||
|description=CAGE_peak_5_at_MDM4_5end | |description=CAGE_peak_5_at_MDM4_5end | ||
|id=chr1:204494323..204494353,+ | |id=chr1:204494323..204494353,+ | ||
|ontology_enrichment_celltype=CL:0000039!3.79e-09!7;CL:0000586!3.79e-09!7 | |ontology_enrichment_celltype=CL:0000039!3.79e-09!7;CL:0000586!3.79e-09!7 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006965;7.14e-26;2!UBERON:0004872;2.18e-08;7 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!3.73e-23!7;UBERON:0002106!2.08e-19!3;UBERON:0004854!2.08e-19!3;UBERON:0009034!2.08e-19!3;UBERON:0002095!2.08e-19!3;UBERON:0004782!2.08e-19!3;UBERON:0003281!2.08e-19!3;UBERON:0009664!2.08e-19!3;UBERON:0002296!2.08e-19!3;UBERON:0005602!2.08e-19!3;UBERON:0001179!2.08e-19!3;UBERON:0006293!2.08e-19!3;UBERON:0002370!7.47e-08!4;UBERON:0005058!7.47e-08!4;UBERON:0009113!7.47e-08!4;UBERON:0003295!7.47e-08!4;UBERON:0005562!7.47e-08!4;UBERON:0000945!1.31e-07!8;UBERON:0010039!1.31e-07!8 | |ontology_enrichment_uberon=UBERON:0004177!3.73e-23!7;UBERON:0002106!2.08e-19!3;UBERON:0004854!2.08e-19!3;UBERON:0009034!2.08e-19!3;UBERON:0002095!2.08e-19!3;UBERON:0004782!2.08e-19!3;UBERON:0003281!2.08e-19!3;UBERON:0009664!2.08e-19!3;UBERON:0002296!2.08e-19!3;UBERON:0005602!2.08e-19!3;UBERON:0001179!2.08e-19!3;UBERON:0006293!2.08e-19!3;UBERON:0002370!7.47e-08!4;UBERON:0005058!7.47e-08!4;UBERON:0009113!7.47e-08!4;UBERON:0003295!7.47e-08!4;UBERON:0005562!7.47e-08!4;UBERON:0000945!1.31e-07!8;UBERON:0010039!1.31e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.68e-99;2!UBERON:0005058;5.68e-99;2!UBERON:0009113;5.68e-99;2!UBERON:0004177;1.81e-40;5!UBERON:0005057;1.81e-40;5!UBERON:0000077;1.98e-08;27!UBERON:0002405;1.98e-08;27!UBERON:0001638;8.37e-07;9!UBERON:0003920;8.37e-07;9!UBERON:0004582;8.37e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.11e-50,4;UBERON:0005058,3.11e-50,4;UBERON:0009113,3.11e-50,4;UBERON:0003295,3.11e-50,4;UBERON:0005562,3.11e-50,4;UBERON:0003351,5.98e-34,6;UBERON:0004177,2.74e-29,7;UBERON:0005057,2.74e-29,7;UBERON:0000974,6.99e-21,10;UBERON:0003408,6.99e-21,10;UBERON:0001042,6.99e-21,10;UBERON:0009145,6.99e-21,10;UBERON:0006562,4.28e-19,11;UBERON:0009722,4.28e-19,11;UBERON:0007690,4.28e-19,11;UBERON:0008814,4.07e-12,18;UBERON:0001557,1.55e-11,19;UBERON:0004807,3.65e-08,28;UBERON:0000077,6.44e-08,29;UBERON:0001638,8.37e-07,9;UBERON:0003920,8.37e-07,9;UBERON:0004582,8.37e-07,9;UBERON:0002368,9.98e-07,35 | |||
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|short_description=p5@MDM4 | |short_description=p5@MDM4 | ||
}} | }} |
Latest revision as of 01:31, 20 September 2015
Short description: | p5@MDM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_MDM4_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | -14bp_to_uc009xbe.1_5end |
EntrezGene: | MDM4 |
HGNC: | 6974 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 3.11e-50 | 4 |
hemolymphoid system gland | 3.11e-50 | 4 |
thymic region | 3.11e-50 | 4 |
pharyngeal gland | 3.11e-50 | 4 |
thymus primordium | 3.11e-50 | 4 |
pharyngeal epithelium | 5.98e-34 | 6 |
hemopoietic organ | 2.74e-29 | 7 |
immune organ | 2.74e-29 | 7 |
neck | 6.99e-21 | 10 |
gland of gut | 6.99e-21 | 10 |
chordate pharynx | 6.99e-21 | 10 |
pharyngeal region of foregut | 6.99e-21 | 10 |
pharynx | 4.28e-19 | 11 |
entire pharyngeal arch endoderm | 4.28e-19 | 11 |
early pharyngeal endoderm | 4.28e-19 | 11 |
pharyngeal arch system | 4.07e-12 | 18 |
upper respiratory tract | 1.55e-11 | 19 |
respiratory system epithelium | 3.65e-08 | 28 |
mixed endoderm/mesoderm-derived structure | 6.44e-08 | 29 |
vein | 8.37e-07 | 9 |
venous blood vessel | 8.37e-07 | 9 |
venous system | 8.37e-07 | 9 |
endocrine gland | 9.98e-07 | 35 |