FFCP PHASE1:Hg19::chr4:101439262..101439282,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:101439262..101439282,-
|short_description=p4@EMCN
|description=CAGE_peak_4_at_EMCN_5end
|association_with_transcript=-12bp_to_ENST00000296420,NM_001159694,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51705 | |EntrezGene=51705 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16041 | |HGNC=16041 | ||
|TSSclassifier=strong | |||
|UniProt=Q9ULC0,B4E347,Q4W5J1 | |UniProt=Q9ULC0,B4E347,Q4W5J1 | ||
|association_with_transcript=-12bp_to_ENST00000296420,NM_001159694,NM_016242,uc003hvr.2,uc011cel.1,uc011cem.1_5end | |||
|cluster_id=chr4:101439262..101439282,- | |||
|description=CAGE_peak_4_at_EMCN_5end | |||
|id=chr4:101439262..101439282,- | |||
|ontology_enrichment_celltype=CL:0002139!3.04e-22!24;CL:0000115!4.60e-19!35;CL:0000071!5.88e-16!18;CL:0002546!5.88e-16!18;CL:0002078!5.93e-13!44;CL:1000413!1.48e-09!9;CL:0002620!1.37e-08!23;CL:0005020!6.32e-08!6;CL:0002138!6.32e-08!6;CL:0005022!6.32e-08!6;CL:0000213!8.03e-08!57;CL:0000215!8.03e-08!57;CL:0002544!4.05e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;8.00e-38;24!CL:0000115;1.42e-26;36!CL:0000071;4.80e-26;18!CL:0002078;9.79e-17;45!CL:0002138;1.50e-13;6!CL:1000413;1.87e-13;9!CL:0000213;1.31e-10;58!CL:0000215;1.31e-10;58!CL:0002543;2.16e-09;6!CL:0002544;4.99e-09;6!CL:0002618;5.93e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.75e-38,24;CL:0000115,1.41e-32,36;CL:0000071,2.93e-26,18;CL:0002546,2.93e-26,18;CL:0002078,2.04e-24,45;CL:0000213,3.57e-17,58;CL:0000215,3.57e-17,58;CL:1000413,1.30e-13,9;CL:0005020,1.50e-13,6;CL:0002138,1.50e-13,6;CL:0005022,1.50e-13,6;CL:0002543,2.51e-09,6;CL:0002544,4.86e-09,6;CL:0000222,1.46e-08,121;CL:0002618,5.90e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002546;4.80e-26;18!CL:0005022;1.50e-13;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.45e-19!115;UBERON:0002049!5.01e-19!79;UBERON:0007798!5.01e-19!79;UBERON:0000477!5.40e-18!286;UBERON:0000055!2.31e-16!69;UBERON:0001009!3.93e-16!113;UBERON:0004111!4.23e-16!241;UBERON:0001986!5.88e-16!18;UBERON:0004638!5.88e-16!18;UBERON:0004852!5.88e-16!18;UBERON:0004535!1.33e-15!110;UBERON:0000025!2.00e-15!194;UBERON:0004872!4.97e-14!84;UBERON:0001981!3.65e-13!60;UBERON:0007500!3.65e-13!60;UBERON:0004537!3.65e-13!60;UBERON:0006965!3.65e-13!60;UBERON:0000487!7.47e-12!22;UBERON:0000119!8.55e-12!312;UBERON:0000483!1.21e-10!309;UBERON:0006914!1.10e-09!25;UBERON:0003915!1.48e-09!9;UBERON:0004700!1.48e-09!9;UBERON:0001917!1.48e-09!9;UBERON:0002616!1.57e-09!59;UBERON:0003914!1.94e-09!118;UBERON:0001637!5.19e-09!42;UBERON:0003509!5.19e-09!42;UBERON:0004572!5.19e-09!42;UBERON:0000468!9.69e-09!659;UBERON:0001049!1.79e-08!57;UBERON:0005068!1.79e-08!57;UBERON:0006241!1.79e-08!57;UBERON:0007135!1.79e-08!57;UBERON:0005743!9.36e-08!86;UBERON:0003075!1.40e-07!86;UBERON:0007284!1.40e-07!86;UBERON:0001017!2.05e-07!82;UBERON:0002346!2.52e-07!90;UBERON:0000073!3.81e-07!94;UBERON:0001016!3.81e-07!94;UBERON:0000475!3.85e-07!365;UBERON:0000955!4.03e-07!69;UBERON:0006238!4.03e-07!69;UBERON:0000467!4.22e-07!625;UBERON:0000480!5.12e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;4.80e-26;18!UBERON:0001986;4.80e-26;18!UBERON:0004852;4.80e-26;18!UBERON:0000487;1.90e-20;22!UBERON:0006914;1.94e-17;25!UBERON:0003915;1.87e-13;9!UBERON:0004700;1.87e-13;9!UBERON:0001917;1.87e-13;9!UBERON:0000490;6.14e-11;33!UBERON:0001473;6.64e-10;8!UBERON:0004536;6.64e-10;8!UBERON:0006558;6.64e-10;8!UBERON:0000055;6.62e-09;65!UBERON:0002049;8.67e-09;75!UBERON:0007798;8.67e-09;75!UBERON:0002465;1.01e-07;10!UBERON:0005284;7.00e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.93e-26,18;UBERON:0001986,2.93e-26,18;UBERON:0004852,2.93e-26,18;UBERON:0000487,1.28e-20,22;UBERON:0006914,1.38e-17,25;UBERON:0002049,1.43e-15,78;UBERON:0007798,1.43e-15,78;UBERON:0003915,1.30e-13,9;UBERON:0004700,1.30e-13,9;UBERON:0001917,1.30e-13,9;UBERON:0000055,1.75e-13,68;UBERON:0001473,6.64e-10,8;UBERON:0004536,6.64e-10,8;UBERON:0006558,6.64e-10,8;UBERON:0004535,1.29e-09,109;UBERON:0001009,3.83e-09,112;UBERON:0007500,1.75e-08,59;UBERON:0001981,1.75e-08,59;UBERON:0004537,1.75e-08,59;UBERON:0006965,1.75e-08,59;UBERON:0002465,1.01e-07,10;UBERON:0005284,6.30e-07,5 | |||
|phase1_expression=1.99846217197612,2.14100523890983,0.140954404095971,0,0,0.872338524100369,0,0,0,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0.487932798790507,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,2.64240395401362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.982343066232845,0,0,0,0,0,0,0,0,4.96906018416763,3.4409383804245,2.42998351125316,9.04492707078415,2.51699661725944,1.37559020970034,1.67195973229448,14.2129217543131,18.8556119223956,13.7235451233515,2.41697590265488,3.80136052859256,1.70843440283719,5.14728312484216,0.81014194788176,14.4665559820209,15.2679973385795,13.4007661775153,3.06633274931766,0,2.19842092716489,0,0,0,0.496971951695318,0.379891534993739,0,0.860509862246441,0.709336764396714,0,0,0.49333509683432,0.933633106199299,2.02066008104532,0.817309515567294,2.57307626996383,8.64263886719998,0,0.312160076830321,0.570471821544449,1.49448680551801,0.117434498643765,0,0,0.61246251376468,0,0.413303124703062,0,0,0,0,0.168336113954066,0,0,0,0,0,0.680593098960126,1.4351170855109,0.427114777637135,0.847727604638247,0.300091096084402,0.206105058476878,0,0.18611685633159,2.53164498361899,2.33848812386877,3.28163906517349,1.28869858099219,1.13152239773168,2.13005755509969,2.41805035746337,1.01736355386293,0,0,0,0,0,0,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0,2.95394953340702,0,0,0,0,0,0,0,0,0,0,0,0,5.4859250149208,3.24089858803628,4.94660795809955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.19086102328316,0,0,0,0.616964956219941,0,0.285826432630578,0.784917590417525,5.66748089483264,4.91366515000365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0.36807447515742,3.00102312635806,1.08506009479894,0,0,0,0,0.300946099727719,0,0,0.664225598535437,0,0,0.587403472388222,2.40200396667599,0,0,0,0,0,0,0.744323423456331,0,0,0.128139149255701,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,1.87103075804167,3.88648648983851,0,0,0,0,0,0,0,0,0.256450125116389,0,0,2.7821073144885,0,0,0,0,0,0.193341436584244,0,0.307007349452259,0,0,0,0,0.267096106940212,0,0,0,0,0,0,0.6970372701606,4.31247012246524,0,0,0.37064843820784,0.286249773483982,5.95453390975468,1.2655176988749,0.190630193923825,0,0.42793898803392,0.95460974377781,0,0.179872457583315,0,0,0.808729926293264,0,0.421258456238981,0,0,0,0,0,1.13008116620243,0,0.66343897524122,1.31535265576129,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0,0,0,0.379473173765715,0.349934720244983,0,0,0,1.60044461320525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75809815126273,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0.19924798825107,0.276283915531148,0,0,0,2.48831670129446,0,0,0,1.08507746200627,0,1.11136990144637,0,0.556608588971108,0,0,0,0,0,0,0,0,1.16641845353302,0,1.77148277162768,0.60298219312704,1.52581736317083,0.110579259931225,0,0.658156191461918,0,0,4.69396576873162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,1.23840590304675,4.888241159469,0,0,0,0.337005664903385,1.60515529459758,0.234264445725339,0,0,0,0,0,0.61214552326098,2.40109002588254,0,0,0,0,0,0,0,1.24807205711825,0,0,0,1.57254001417827,0,0,0,0,0.775912131907355,0,10.3951140759045,0.137041924646751,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.410716136675979,0,0,0,0,0.916641696046735,0.717873024576814,0,0.429226048136571,0.669514372325618,0.739018197353989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,2.36417121897595,5.77000469484979,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0.653174720218818,0,0,0,0,1.17241786942466,0,0.387848869084652,0,0,0,5.55294545352012,5.65935498358797,2.48543433208317,0,0,0,0,0,0,0.306345576763462,0,0,0,0.122026264901963,0.3755727921195,0.573409195690071,0.110929051536852,0.372578417648301,0,0,0.606596470166591,0,0,0,0,0,0,0,0.378806010550178,0,0,0,0,0.15543720058278,0.443565449968902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0947918582921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.991486114072017,7.26238393365217,0.636008701306837,0,0,0.352675943690684,0,0.192687675289379,0,0.319267718114302,0.205116364240755,0.504143392443436,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,2.85799247727178,0,0,0,0.327543835020193,0,0.202612753855184,0,0.206686796501184,0.253663240775627,0,0.548257766857182,0.992422356778588,0,0,0,1.00885116665647,0,0,0,0,1.20041606606193,0.271878931907327,0.0657727735628491,0,0,1.17739639275771,0.471346769748006,0,7.30526976407596,0,0,12.5083952309149,0,0,13.3870869672986,0,0,0,0,0.430227358820278,0,0,2.11693525095465,0,0,0,0,0,0,1.29485767437579,0.615976841137482,0,6.31424290976881,0,0,0,0,0,0,0.540219106755613,2.40415516554353,0,0.490296643507811,0,1.17785080268967,1.18818560130834,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| ||
|short_description=p4@EMCN | |||
}} | }} |
Latest revision as of 02:50, 20 September 2015
Short description: | p4@EMCN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_EMCN_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_ENST00000296420, NM_001159694, NM_016242, uc003hvr.2, uc011cel.1, uc011cem.1_5end |
EntrezGene: | EMCN |
HGNC: | 16041 |
UniProt: | Q9ULC0B4E347Q4W5J1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.75e-38 | 24 |
endothelial cell | 1.41e-32 | 36 |
blood vessel endothelial cell | 2.93e-26 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.93e-26 | 18 |
meso-epithelial cell | 2.04e-24 | 45 |
lining cell | 3.57e-17 | 58 |
barrier cell | 3.57e-17 | 58 |
endothelial cell of artery | 1.30e-13 | 9 |
lymphangioblast | 1.50e-13 | 6 |
endothelial cell of lymphatic vessel | 1.50e-13 | 6 |
vascular lymphangioblast | 1.50e-13 | 6 |
vein endothelial cell | 2.51e-09 | 6 |
aortic endothelial cell | 4.86e-09 | 6 |
mesodermal cell | 1.46e-08 | 121 |
endothelial cell of umbilical vein | 5.90e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 2.93e-26 | 18 |
endothelium | 2.93e-26 | 18 |
cardiovascular system endothelium | 2.93e-26 | 18 |
simple squamous epithelium | 1.28e-20 | 22 |
squamous epithelium | 1.38e-17 | 25 |
vasculature | 1.43e-15 | 78 |
vascular system | 1.43e-15 | 78 |
endothelial tube | 1.30e-13 | 9 |
arterial system endothelium | 1.30e-13 | 9 |
endothelium of artery | 1.30e-13 | 9 |
vessel | 1.75e-13 | 68 |
lymphatic vessel | 6.64e-10 | 8 |
lymph vasculature | 6.64e-10 | 8 |
lymphatic part of lymphoid system | 6.64e-10 | 8 |
cardiovascular system | 1.29e-09 | 109 |
circulatory system | 3.83e-09 | 112 |
epithelial tube open at both ends | 1.75e-08 | 59 |
blood vessel | 1.75e-08 | 59 |
blood vasculature | 1.75e-08 | 59 |
vascular cord | 1.75e-08 | 59 |
lymphoid system | 1.01e-07 | 10 |
brain vasculature | 6.30e-07 | 5 |